Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01940 ATGAAGATTCAGTGCAACGTTTGTGAGGCTGCCGAGGCCAAGGTTCTGTGTTGTGCTGATGAGGCTGCTCTGTGTTGGGAGTGTGATGAAAAGGTTCATGCGGCTAACAAGCTTGCCAGCAAGCACCAGAGAGTTCCTCTTTCTACCTCTTCCTCTCATATGCCCAAATGTGACATTTGCCAGGTTTGTGTGGGGATTGCAATTGCTGTTTCTGCTGATTTTCGACTCACTTGTGATGATGGTAGAGTCTGCTACCCTTTACAGGAAGCATTAGGATATTTTTTCTGTCTAGAGGATCGGGCTCTGTTCTGCAGAAAATGTGATTTGGCAATACATACAGCAAATGCTTATGTCTCTGGTCATCAGAGGTTTCTTCTCACTGGTGTAAGAGTAGGCCTTGAAGCTACAGAGCCTGGTGCATCCTCATCATCTTTGAAGTCAGATTCTGGGGAGAAAATTTCTGATACAAAGTCGTCTCCTATCTCTAGAAAGGTTTCCACAGAGCCTCAGAACTCAGATTATAATGAATTGTTACCTATCCAAGGTGGAGGAGTTGGGGGGTTTCCACCAGCTAAGGAGTCTTTTGGTGGTGGTTCTACAGTTGGAAATATCTCACAGTGGACCATAGATGAATTTATTGGGCTAAACGAGTTCAGTCAGAATTATGATTACATGGAAGGATCAACAAGGAGCTTAGATTCATCTTTGGTCATAGATAAATTATGTGTGGTAGTGCCCTTAACACGTGCCTTTGAAAATAGAACAGGGATGGGGCCAATCATGTCTGCCAAAGTCTTATCTCTATGGTTGTATGGTTGTGTAATTTTCTTTTTCACCTCTTCCTTTCTTGATGAGTATGTGCAGGCTGACAGTGGTAAGTTAGGGGATTCTGATTCTCCGGTTTTAAGATCCGGTGAGGAGGAAATGGAGGAGGAGGAGGAGGAGTATTTGGAACATGTTCCAGATTCTTCATGGACAGTTCCACAGATCCCTTCACCACCAACAGCTTCTGGGTTACACTGGCCAAAACACCTTCAGTATTCATCTAATAGTCTTATGTTTGTTCCAGACATAAGCTTTTCTCACATGCAACAACACTCTCAGATCAGTAGTATTGTTTCTAGACGCCGGAGGCATCTTCAATAA 1146 0.4363 MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVPLSTSSSHMPKCDICQVCVGIAIAVSADFRLTCDDGRVCYPLQEALGYFFCLEDRALFCRKCDLAIHTANAYVSGHQRFLLTGVRVGLEATEPGASSSSLKSDSGEKISDTKSSPISRKVSTEPQNSDYNELLPIQGGGVGGFPPAKESFGGGSTVGNISQWTIDEFIGLNEFSQNYDYMEGSTRSLDSSLVIDKLCVVVPLTRAFENRTGMGPIMSAKVLSLWLYGCVIFFFTSSFLDEYVQADSGKLGDSDSPVLRSGEEEMEEEEEEYLEHVPDSSWTVPQIPSPPTASGLHWPKHLQYSSNSLMFVPDISFSHMQQHSQISSIVSRRRRHLQ 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01940 381 MobiDBLite consensus disorder prediction 292 313 - -
Vimu4g01940 381 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 361 - -
Vimu4g01940 381 CDD Bbox1_BBX-like 5 47 - -
Vimu4g01940 381 ProSiteProfiles Zinc finger B-box type profile. 79 126 IPR000315 GO:0008270
Vimu4g01940 381 MobiDBLite consensus disorder prediction 137 176 - -
Vimu4g01940 381 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vimu4g01940 381 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vimu4g01940 381 SMART bboxneu5 79 126 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01940 Vimu-Chr4 21459588 21462814 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01940 1 380 C2C2-CO-like Transcription Factor Family AT1G78600 41.944 2.47e-82 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01940 - - gmx:100790959 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01940 4 21459588 21462814 Vimu4g01940 4 21459588 21462814 ECH