Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01929 ATGTCCATTTCTGATTTGCAGGATAAGAACGTTAATAACGGTGAGAATACTCATGGCAATGGAACAACGTCGTCTGGAACGACAACAAAAAAGACAACGTTCTTCTCTTCCGTTTTGAAAACGCTGGAGAAGTTGAACCCGTTCAAAAACGGGTCGAAGGATACGACCCATTTGGAAGATGGAACGTTGATTTGTCCAAGCCCAGAAGGAGAAGGTTCTCTCTGTCTTAGATTTCTGAAAAGCAATTTAGGAGATCTTTCATACAACAACTTCACCGATAAAAACTCCGAAGCATGCCAAGAGACTGAAGGCGAAATGAACTTGTTTGCAAGCTTCCCAAGGAGCCAAAGGGCACCTGTTACTTGTCTGGCTAGGGGAAGGGGAAACTGTACGAGAACCTTTGACTATTTCCATATAAATTGTGGTGGTGAACAAGTGAAAAGTAGTGAAGGTATAGTATACGATGAAAACTCGGATCCATCGGGAGCAGCAACATCTAAAATGATCTATGACAACTGGGCCTTTAGCAATACTGGTCATTTCTTGGATGCTAATAATAATGCAGAAGTCTATATCCAAAAAAGTCAAAATACGCTTTCTATGACTGATTCTGCATTGTATCAGAGTGCACGTGTATCTCCCATTTCTTTGACTTATTACGGAATGTGTCTGGAAAATGGAGAGTACACAGTATCACTGCATTTTGCAGAGATCATGTTCACTGATGATAACACATATAGCAGTCTTGGAAGACGTATATTTCATGTTTACATTCAGGGAAAGCTAGAATTGAAGGATTTCAATATTGCAAATGAAGCAGGAGGAGTTGGGAAGAACATCACAAAAAGAATTTCAACTACTGTTAGTAATAACTCTTTAGAGATTCGATTTTATTGGGCTGGAAAAGGAACAACTGCTATCCCATATAGATCAGTATATGGCCCTCTTATATCAGCTATATCTGCCACTCGTGTAAACAACAGTTCCAGAACAGATACAGGTAGCATGGCTATAGGGGTTGTAATTGGGATAGCAGTTTCTGCAATAATATTTGTCATACTTGTTGTACTTGCCTGGAGACTTCATATTGGCAAAAGAAATTCATTAACAAAAGGAAAGAAACTTTACATAGTAAATGGATATATGGCTCCGGAATATGCCATGCATGGTTATTTAACTGATAAAGCAGATGTTTATAGTTTTGGAGTGGTTGCCTTGGAAATTGTAACTGGAAAGAGTAATACCATCCCTCGACCCAAGGAAGAAGCATTGCATCTTTTAGATTGGGCCCATTTGCTGAAAGAGAAAGGGAATCTGATGGAGCTTGTTGACAGAAGGTTAGGATCAAATTTCAATGAAAAAGAGGTTATGGCGGTGATAAAAGTGGGTCTTTTGTGCACAAATGTCACTGCAAATGTTAGGCCTACCATGTCAACAGTGCTTAGCATGCTTGAAGGAAAAGCTGTGATTCCAGAATTTATTTCAGATTCATCTGAAATAATGGATGAAAAGAAACTAGAGGCTATGAGACAATATTACTCTCAAATTGAAGAAAATGAGAGCAATGAAACACATAGAAATCATAGTTCATCAAAAGATGGACCATGGACTGCTTCGTCTTCATCAGCTGCAGATTTATATCCTGTCCATATTGATTCTTCTTATTGGGAGAAAAGAAATTAG 1683 0.3868 MSISDLQDKNVNNGENTHGNGTTSSGTTTKKTTFFSSVLKTLEKLNPFKNGSKDTTHLEDGTLICPSPEGEGSLCLRFLKSNLGDLSYNNFTDKNSEACQETEGEMNLFASFPRSQRAPVTCLARGRGNCTRTFDYFHINCGGEQVKSSEGIVYDENSDPSGAATSKMIYDNWAFSNTGHFLDANNNAEVYIQKSQNTLSMTDSALYQSARVSPISLTYYGMCLENGEYTVSLHFAEIMFTDDNTYSSLGRRIFHVYIQGKLELKDFNIANEAGGVGKNITKRISTTVSNNSLEIRFYWAGKGTTAIPYRSVYGPLISAISATRVNNSSRTDTGSMAIGVVIGIAVSAIIFVILVVLAWRLHIGKRNSLTKGKKLYIVNGYMAPEYAMHGYLTDKADVYSFGVVALEIVTGKSNTIPRPKEEALHLLDWAHLLKEKGNLMELVDRRLGSNFNEKEVMAVIKVGLLCTNVTANVRPTMSTVLSMLEGKAVIPEFISDSSEIMDEKKLEAMRQYYSQIEENESNETHRNHSSSKDGPWTASSSSAADLYPVHIDSSYWEKRN 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01929 560 SUPERFAMILY Protein kinase-like (PK-like) 380 497 IPR011009 -
Vimu4g01929 560 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 135 325 - -
Vimu4g01929 560 Gene3D - 136 325 - -
Vimu4g01929 560 Pfam Protein tyrosine and serine/threonine kinase 367 483 IPR001245 GO:0004672|GO:0006468
Vimu4g01929 560 Gene3D Transferase(Phosphotransferase) domain 1 355 500 - -
Vimu4g01929 560 Pfam Malectin domain 137 320 IPR021720 -
Vimu4g01929 560 MobiDBLite consensus disorder prediction 1 28 - -
Vimu4g01929 560 MobiDBLite consensus disorder prediction 518 541 - -
Vimu4g01929 560 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 80 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01929 Vimu-Chr4 21313454 21320574 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01929 380 545 Receptor kinase-like Gene Family AT1G07650 54.217 2.73e-49 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu4g01929 Malectin 5.8e-46 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01929 - - vum:124835551 452.21