Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01927 ATGAAGAAGAACTACGATGTCGAGATCAAAACAACCTCTTACTCCTTCCATATAAATTGTGGTGGAAATGATGTGATAACCATTGGAGATACAACATATGATCGTGATTTAACCGTTCAATCGGAAGACGCAGCAATATCTTATTCGTCATATTGGGCAATTAGCAATACTGGTATCCTATTAGACGCTAACAGTGAAAAAGAAGCACACAGCTACGAAGTACAAAATATATCAAGGCTTTATATGTCTGATGCTGAAGCTAAACTCTATACCACTGCAAGAATGTCTCCCCTTTCTTTAACTTATTATGGATTTTGCCTGGCCAATGGGAATTACACAGTAAGACTTCACTTTGCTGAGATAATGTTCACAGATGATAACACATACAGAAGCCTAGGTAGACGATTATTTGATGTTTACATTCAGGGAAAACGAGTATTGAAGGATTTCAATATAGCAAAGAAAGCACAAGGGGCTGGAAAGGCTCATATAGAAAATTTTACTGCTTCTGTGAGTAACTCAACCTTAGAGATTCGTTTCTATTGGGCAGGAAAAGGGTCAACTGGTATTCCAAAAAGATCGGTATATGGCCCTCTTATTTCAGCAATATCTGTCACTTCTGAATTCAAGGATTTAGATTTGAAAACTGGTGTATTTACCTTACGTCAAATCAAAGTAGCAACAAATAACTTCAATATTTCCAACAAGATTGGAGAAGGAGGATTTGGTCCTGTGTATAAGGGCATTTTGTGGGATGGCACAATGATAGCAGTCAAACAACTTTCATCTAAATCAAAACAAGGAAACCGTGAGTTCATAAATGAGATAGGCTTGATCTCAGCTTTGCAACACCCTTATCTGGTTAAACTTTATGGTTGTTGTGTCGAGGGAGATCAACTGTTGCTGAAGATTTGCATAGGTATTGCTAAAGGCTTGGCTTTCCTACATGAAGAATCACGAATCAAAATTGTTCACAGGGACATCAAGGCCACTAATGTGTTGCTTGATAAAGAGCTAAATCCAAAAATATCTGATTTTGGTTTAGCTAAACTTGATGAGGAAGACAACACTCATATAAGCACTCGAATAGCTGGGACCTTTGGATACATGGCTCCTGAATATGCCATGCATGGTTATTTGACAGAGAAAGCAGATGTTTATAGTTTTGGAATTGTTGCCTTGGAAATTGTTAGTGGAAAAAGTAACACAATCCACCGACCAAAGGAGGGAACAATCTGCCTTCTTGATTCGGCACGTGTGTTGAAAGCAGAAGGTAAATTAATGGAGTTAGTTGATGAAAGACTGGGGTCAACTATCAATGAAGAAGAAGTCATGGTGATGATTAATGTGGCTCTTCTGTGCACCAATGCTACTTTCAATCTTAGACCCACCATGTCTTCAGTTGTAAGCATGCTTGAAGGCAAAAGTCTTGTTTCAGAATTTGTTTCAAATACAAGTGAAGTTATGGATGAAATGAAGTTAGAAGCAATGAGACAGTACTATAATCAAAGTCAAAGTTTATCAATTGAATGGCCTTCATCTTCATCTTCTGTTGATCCTTATTCCATTCACCATAATTCATCATTGGAGACAAAGAGATTAAAAGATTCTATATAA 1617 0.3735 MKKNYDVEIKTTSYSFHINCGGNDVITIGDTTYDRDLTVQSEDAAISYSSYWAISNTGILLDANSEKEAHSYEVQNISRLYMSDAEAKLYTTARMSPLSLTYYGFCLANGNYTVRLHFAEIMFTDDNTYRSLGRRLFDVYIQGKRVLKDFNIAKKAQGAGKAHIENFTASVSNSTLEIRFYWAGKGSTGIPKRSVYGPLISAISVTSEFKDLDLKTGVFTLRQIKVATNNFNISNKIGEGGFGPVYKGILWDGTMIAVKQLSSKSKQGNREFINEIGLISALQHPYLVKLYGCCVEGDQLLLKICIGIAKGLAFLHEESRIKIVHRDIKATNVLLDKELNPKISDFGLAKLDEEDNTHISTRIAGTFGYMAPEYAMHGYLTEKADVYSFGIVALEIVSGKSNTIHRPKEGTICLLDSARVLKAEGKLMELVDERLGSTINEEEVMVMINVALLCTNATFNLRPTMSSVVSMLEGKSLVSEFVSNTSEVMDEMKLEAMRQYYNQSQSLSIEWPSSSSSVDPYSIHHNSSLETKRLKDSI 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01927 538 Pfam Malectin domain 15 203 IPR021720 -
Vimu4g01927 538 SUPERFAMILY Protein kinase-like (PK-like) 217 474 IPR011009 -
Vimu4g01927 538 Gene3D Transferase(Phosphotransferase) domain 1 301 495 - -
Vimu4g01927 538 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 45 302 - -
Vimu4g01927 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 323 335 IPR008271 GO:0004672|GO:0006468
Vimu4g01927 538 Pfam Protein tyrosine and serine/threonine kinase 301 472 IPR001245 GO:0004672|GO:0006468
Vimu4g01927 538 Gene3D - 11 205 - -
Vimu4g01927 538 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 201 305 - -
Vimu4g01927 538 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 13 208 - -
Vimu4g01927 538 Gene3D Phosphorylase Kinase; domain 1 206 300 - -
Vimu4g01927 538 FunFam Putative LRR receptor-like serine/threonine-protein kinase 299 484 - -
Vimu4g01927 538 SMART serkin_6 231 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01927 538 ProSiteProfiles Protein kinase domain profile. 231 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01927 Vimu-Chr4 21284287 21297397 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01927 14 517 Receptor kinase-like Gene Family AT1G07650 53.691 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu4g01927 Malectin 1.7e-42 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01927 - - gmx:100785451 664.07