Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01923 ATGGCACGAAGACCAAATACCTCGAACCCAACATCTTCTATTGAAGGGATGATCAATGTGATGCAACAACAGCATGCAGCTCAGGTACCTCAGAATCATGATTGTTTGAGTGATTTTATGATGCACAATCCATCCAAGTTCAATGGGGAGGCTACCCCTGATGAGGCAGACGCTTGGATTAGAAAAATTGAGAAGATCTTCAAGGCGATCGCATGTCCAGAGAAACAAAAGCTCGTTTATGCATCCTTTCTGTTGGTGGATGGAGCTGACTATTGGTGGGATGGTATGCAGCAGATGATGGAGGCTCGTTGTGAGGCCATCAACTGGGCCAGCTTCAGGACGAGGTTTCTGGAGAGATACTTCCCAGATAGTTATAAGTTTCAACGAGAGGCTGAATTCTTGGTGTTGCAACAGGGCAAGATGACTGTGCAGACCTATGTGGACCGATTTGAGTATTTGGCTCGGTTCGTCTCTCAAAAGATGAGCGAAGAATATAGGTGTCGGAGGTTTCAGGGAGGCTTGAGGCCCGAGCTAAGGATAGTTATTGTGCCGTTGAAGATTAAGGAGTTTCCAACTTTGGTGGAGAAGACCAAGATGGTAGAACAACTGCAAGTGGACCTAAGTCTGGATGTGAGGACTCAAAAGGGTAGTTTTTCTGGTGAGAAACAACAAAGGAAGCCTTACGATAGGCCTCAACAGTTCAGTTGTGGAAAGACTGATGGGAAGAGATGTTTCATCTGCAACAACTTAGGGCACTTTGCTCGTGCTTGTTCTGAAAGGAAGCTAGTGACTGGACCCCAACAGCAGAAATCTTCCGGAGGGAAGCCAACAGCAGCCAGGAGAGCTTTCGTGATGTCTGACGTGAAAGCGGCTCAGTCAGATCTCAGGGACACAAAATTGCAAACTGGTGTATTTACCTTGCATGAAATCAAAGTTGCAACAAATAACTTTGATGTTTCCAATAAGATTGGAGAAGGAGGCTTCGGTCCTGTTTATAAGGGCATTCTGCCCAACGGCAAACCAGTAGCAGTTAAGCAACTTTCTTCTAATTCAGACCAAGGAACCCGGGAATTTATAAATGAGATTGGCATGATCTCTGCTCTGCAACATCCTAATCTTGTTAAACTTTATGGTTGTTGTGTTGAGGGTGATCAATTGTTGTTAGTGTATGAATATATGGAAAACAATAGCCTAGAACATGCTTTATTTGACTCAGAAGATCGCCATTTAAAATTGAATTGGGCAACAAGAAAAAACATCTGTATTGGCATTGCTAGAGGTTTAGCTTTCCTGCATGAAGAATCAAGACTGAAAGTAGTTCATAGAGACTTCAAGACCTCTAATGTATTGCTTGATGAAGACCTAAACCCGAAGATATCTGATTTTGGTTTGGCCAGACTTCGTGTGGGGGATAATACACACATAAGCACCAGAACTGCAGGGACTTGGGGATATATGGCTCCTGAGTATGCAATGCATGGTTATCTAACTGAAAAAGCAGACGTTTTTAGTTTTGGAGTTGTTATCTCGGAAATTGTAAGTGGTAAGAGAAATACTATTAGGCAGTCAAAAGGGGAAGCTTTCAATCTTCTGGATTGGGCACGTTTGTTGAATGAGAGAGGTAACATAATGGAGCTAGTTGATCCAAAGTTGAATTTATATTTCTATAATGAGATAAGGTTGGTTATCAAAGTGGCTCTCCATTGCACCCATGTTAATTCAAGCTACAGGCCCTCTATGTCTTCAGTGCTAAGCATGCTTGAAGGCAGAACAATGGTCCCAGAGTTTGCTTCACAGTGTAGTGAAGTGATGGATGAGATGAAGCTCGAGTTAATGAAAGAGTATTACAGTGAAATGGATGAAAATAAAACAAATAACAGAAGAAGTTTGAGCTTAACCAAAGGTGTTCCATGGACTGATTCTTCTTCAACAGCTACGGACATTAATGTGGCTCACCTTGATGCTTAA 1968 0.4253 MARRPNTSNPTSSIEGMINVMQQQHAAQVPQNHDCLSDFMMHNPSKFNGEATPDEADAWIRKIEKIFKAIACPEKQKLVYASFLLVDGADYWWDGMQQMMEARCEAINWASFRTRFLERYFPDSYKFQREAEFLVLQQGKMTVQTYVDRFEYLARFVSQKMSEEYRCRRFQGGLRPELRIVIVPLKIKEFPTLVEKTKMVEQLQVDLSLDVRTQKGSFSGEKQQRKPYDRPQQFSCGKTDGKRCFICNNLGHFARACSERKLVTGPQQQKSSGGKPTAARRAFVMSDVKAAQSDLRDTKLQTGVFTLHEIKVATNNFDVSNKIGEGGFGPVYKGILPNGKPVAVKQLSSNSDQGTREFINEIGMISALQHPNLVKLYGCCVEGDQLLLVYEYMENNSLEHALFDSEDRHLKLNWATRKNICIGIARGLAFLHEESRLKVVHRDFKTSNVLLDEDLNPKISDFGLARLRVGDNTHISTRTAGTWGYMAPEYAMHGYLTEKADVFSFGVVISEIVSGKRNTIRQSKGEAFNLLDWARLLNERGNIMELVDPKLNLYFYNEIRLVIKVALHCTHVNSSYRPSMSSVLSMLEGRTMVPEFASQCSEVMDEMKLELMKEYYSEMDENKTNNRRSLSLTKGVPWTDSSSTATDINVAHLDA 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01923 655 ProSiteProfiles Protein kinase domain profile. 317 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01923 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Vimu4g01923 655 ProSiteProfiles Zinc finger CCHC-type profile. 243 259 IPR001878 GO:0003676|GO:0008270
Vimu4g01923 655 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 291 619 - -
Vimu4g01923 655 Gene3D Phosphorylase Kinase; domain 1 279 392 - -
Vimu4g01923 655 FunFam Putative LRR receptor-like serine/threonine-protein kinase 393 599 - -
Vimu4g01923 655 SUPERFAMILY Protein kinase-like (PK-like) 301 590 IPR011009 -
Vimu4g01923 655 Pfam Protein kinase domain 318 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01923 655 Gene3D Transferase(Phosphotransferase) domain 1 393 604 - -
Vimu4g01923 655 SUPERFAMILY Retrovirus zinc finger-like domains 237 260 IPR036875 GO:0003676|GO:0008270
Vimu4g01923 655 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 286 392 - -
Vimu4g01923 655 Pfam Retrotransposon gag protein 80 176 IPR005162 -
Vimu4g01923 655 Gene3D - 237 275 - -
Vimu4g01923 655 CDD STKc_IRAK 323 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01923 Vimu-Chr4 21243552 21246581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01923 294 647 Receptor kinase-like Gene Family AT1G07650 59.831 1.52e-133 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu4g01923 Pkinase 5.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01923 - - vra:106779469 1273.07