Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01920 ATGAGGGTGAGTTACCCTCGTTTCTTCTTATTCCTTCTGCTCCTTGCTGTGTTTTGCTTTGATTCCTTAGCTTCTGGAGCCACTCTTTCCCAAGATGAAGTGGAAGCTCTGAAAGATATAGCTACGACACTTGGGAAGAAGGACTGGGATTTCAGTGTAGATCCTTGCAGTGGAGAACGTAATTGGACATCTACAGTTCAAGTAAAAGGGAGTGAAAATGAATTAAGATGCAATTGCTCTTATAACAATGACACCGTTTGTCATGTCACCAACATAATTTTGAAAGCACAAAATCTCCCAGGCACTCTCCCCCAAGATCTGTTCAGATTGCCTTTCATACAAGAATTTGACGTTAGTCGCAATTACCTGAACGGCACAATTCCCAAAGAATGGGGCACCACCAAACTTCTCAACATTTCCCTCCTCGGAAATCGATTAACGGGTTCAATACCAAAAGAGATAGCAAACATATCCACTCTTCAAAGTTTGGTCGTGGAGGCCAATCAACTATTTGGAGAACTTCCTCTTGAGCTTGGGAATCTACCCCAAATTCAAAGACTACTACTTTCCTCTAACAATTTTACTGGAAAGTTACCTGAAACATTGAACAAGCTCACTACATTGCAGGATATTCGACTTGGGGACAATCAGTTTTCTGGGAAGATACCTGATTTTATTCAAAGTTGGACAAGTCTCCAAAAACTAGTGATTCAAGGTAGTGGATTCGATGGGCCTCTTCCTTCTGGAATCTCACTTCTGAAAAACTTAACTGACTTGAGAATTAGTGATCTCAATGGGTCTGAACAGTCAACTTTTCCACAACTTAATAACATGTCGTTGAAATATCTGATTTTGAGGAATTGCAACATCAATGGAACTCTACCAACATATCTTGGGACAATGACAACCTTGAAAAACCTAGACCTCAGCTTTAACAAATTGACTGGACCAATTCCGAGTAACTATGAAGCCCTGAGAAAAGTTGATTACATATATTTAACTGGAAATCTTCTCGATGGAGAAGTACCTGCATGGACAGACAAAGCTGACAATGTAGGAGCAGCTGCTTGCCTGGGAAGCAATGTCTGTCAGAAAAGCTCATACTCCCTTCATATAAATTGTGGTGGAAAGATGATAACAGAAGGAAAAAGCACATATGATGATGATTTGGATAATGGAGGTCCAGCTAGATTTCACCGAAGTGGATCAAAAAATTGGGCATTTATCACTACTGGTAACTTTATGGATAAAGATGCTGGCGACTACTCTATCTGGCAAAATAAATCATCGCTTTCTGTGGACAATGCTGATCTCTACATGGATGCACGAGTTTCTCCCACTTCTCTAACTTATTATGGATTTTGCTTGGGAAATGGGAACTACACAGTTAATCTACATTTTGCAGAAATCATGTTTATTAATGATCAAACATTTAACAGTTTAGGAAGACGAGTATTTGACATCTATATTCAGGGAGAGCTGGTGCAGAAGGACTTCAATATTGTAGAAGAAGCAGGAGGAATTGGTAAAGCAATCATAAAAAACTTCACTGCAGTTGTGAGTAATAATACTTTGGAGATACGTTTGTATTGGGCTGGAAAAGGGACAACTAGTCTCCCATTTAGATCAGTATATGGTCCTCTTATATCAGCTATATCAGTGGAACCTAACTTTACACCACCCTCAGAAGAAAATGGAAGTAGCATATCTGCTGGAGCTGTGGCAGGAATTGTGGTTGCAGTTGCAATAGTTATCATCATTGTACTTGGTATTCTTTGGTGGAAAGGATGTCTGGGAAAGAAAAGTTCTTTAGAAAAAGTATGTGCCTTGATTGGTGTGTCTTATTATTGGACCTTTAAGACTACTGGCTTTCTTGCTAATGGATATATGGCTCCAGAATATGCCATGCATGGTTATTTGACTGATAAAGCAGACGTCTATAGTTTTGGAATTGTTGTCTTGGAAATAATAAATGGAAGGAACAATACCATTCACCGTCCAAAAGAACAATCATTCTCCATTCTTGAATGGGCAAATCTGTTGAAAGAGAAAGGTGATCTAATGGACCTAGTGGATAGAAGATTGGGCACAAACTTCAACAAAGAGGAAGTGTTAGTGTTGATAAGGGTAGCTCTGTTGTGCACCAACGTTACTACACAACTTAGGCCAAGCATGTCAGCAGTGGTAAGCATGCTAGAAGGAAGAACTGTTGTTGAGGAAGTGTTTTCAGAGGCAAATGATGAGGAAGAGAAGAAGATGGAGAAAATGAGGCTATACTACCAAGAGTTGAGTATCTCAAAGGATGAGCCATGGACTTCTTCATCTACTTCTGCAGCAGATCTTTATCCTGTAAACATCGATTCTTCTTACTTGCAGAAGAGAGGTTAA 2388 0.3961 MRVSYPRFFLFLLLLAVFCFDSLASGATLSQDEVEALKDIATTLGKKDWDFSVDPCSGERNWTSTVQVKGSENELRCNCSYNNDTVCHVTNIILKAQNLPGTLPQDLFRLPFIQEFDVSRNYLNGTIPKEWGTTKLLNISLLGNRLTGSIPKEIANISTLQSLVVEANQLFGELPLELGNLPQIQRLLLSSNNFTGKLPETLNKLTTLQDIRLGDNQFSGKIPDFIQSWTSLQKLVIQGSGFDGPLPSGISLLKNLTDLRISDLNGSEQSTFPQLNNMSLKYLILRNCNINGTLPTYLGTMTTLKNLDLSFNKLTGPIPSNYEALRKVDYIYLTGNLLDGEVPAWTDKADNVGAAACLGSNVCQKSSYSLHINCGGKMITEGKSTYDDDLDNGGPARFHRSGSKNWAFITTGNFMDKDAGDYSIWQNKSSLSVDNADLYMDARVSPTSLTYYGFCLGNGNYTVNLHFAEIMFINDQTFNSLGRRVFDIYIQGELVQKDFNIVEEAGGIGKAIIKNFTAVVSNNTLEIRLYWAGKGTTSLPFRSVYGPLISAISVEPNFTPPSEENGSSISAGAVAGIVVAVAIVIIIVLGILWWKGCLGKKSSLEKVCALIGVSYYWTFKTTGFLANGYMAPEYAMHGYLTDKADVYSFGIVVLEIINGRNNTIHRPKEQSFSILEWANLLKEKGDLMDLVDRRLGTNFNKEEVLVLIRVALLCTNVTTQLRPSMSAVVSMLEGRTVVEEVFSEANDEEEKKMEKMRLYYQELSISKDEPWTSSSTSAADLYPVNIDSSYLQKRG 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01920 795 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase isoform A 33 192 - -
Vimu4g01920 795 SUPERFAMILY Protein kinase-like (PK-like) 619 737 IPR011009 -
Vimu4g01920 795 Gene3D - 365 557 - -
Vimu4g01920 795 Pfam Malectin domain 369 552 IPR021720 -
Vimu4g01920 795 Gene3D Ribonuclease Inhibitor 200 264 IPR032675 -
Vimu4g01920 795 Gene3D Ribonuclease Inhibitor 265 354 IPR032675 -
Vimu4g01920 795 Gene3D Ribonuclease Inhibitor 33 199 IPR032675 -
Vimu4g01920 795 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 198 265 - -
Vimu4g01920 795 SUPERFAMILY L domain-like 68 344 - -
Vimu4g01920 795 Gene3D Transferase(Phosphotransferase) domain 1 611 760 - -
Vimu4g01920 795 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 13 602 - -
Vimu4g01920 795 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 367 557 - -
Vimu4g01920 795 Pfam Protein tyrosine and serine/threonine kinase 618 730 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01920 Vimu-Chr4 21186665 21194419 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01920 628 780 Receptor kinase-like Gene Family AT1G53420 50.000 2.20e-40 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu4g01920 Malectin 5.7e-43 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01920 - - gmx:732563 943.725