Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01918 ATGGCTCAATTCCAAAAAGCCTTGGACGCCTCTCATCGGTTGAAATTCTGTAAGTCATCATTACCTCTGTCACTTCTGGGAAATCGCTTTACTGGTTCAATTCCTTCAGAAATTAGTGATATGACTAGTCTGCAAGAACTGACATCTTCCCCTGAGCCTTGGAAAAATGAGCAACTTACAGAGATTAGATCTGAGCTCCAACATGCTGACTGGTCCAATCCCAGACTCATTTCAGGACCTGGGAAAAATAAATTACTTCATGGTATTGTTATTATTACTGAGCAGGAACTTAGCTTCCAGCCTCTCTCCCTCAGCAAACACTTCAAAGGCCAACCTTGTCCTGGGAAACCCCGGTGTAAGTGTCTAGACTTGGAAAGTGATCATGATTTTATAAACTACAATGTTCATTCACTGTTCATAAACTGTGGAGGACCTGAAATAGAATTTGAGGGCAATGAATATGAAGCCGACCTCAATCTACGAGGCATATCAAACTATGTTGTTAGTGATGATGGCAAATGGGCATATAGCAGCACCGGAGTATATCTAGGAAGGGATAAGGCTGATTATGTTGCAAACAATCGGTTTAATCTGACAATTAATGGCTCTGAATACTACCATACAGCCCGCATGGCCCCACTATATCTTCATTATTATGGTCTTTGTATGCTGAATGGAAATTATAAAGTGAAACTTCATTTTGCTGAGATAACATTCTCTGATGACAATGCATTTACCAGCCTTGGAAAGCGTGTATTTGATGTTTCAATCCAAGGTTTTAAATATTTGAAAGATTTTAACATTGTGGAAGAAGCTGGTGGAGTTGGTAAGGGAATCACTAAGGAGTTTAATGTGAATGTTACCCACAACACCTTGGAAATCCACTTATCCTGGGCAGGGAAAGGAACTAATGCTATTCCTGAAAGAGGTATATATGGACCTCTTATATCTGCTATCACTGTGACCCCAAACTTTAAAGTTCCTTCACATGGGCTGTCCACTGGAGCAATTGCTGGAATTGTAGTTGGGATATGTGTGTTCATCATATTGATACTCCTTGCACTTTGGAAGATGGGTTTTCTATGTGGGAAAGATGAAACAGACCAAGGTCTGAAGACAGGTTATTTCAGTTTAAGACAGATTAAAGCTGCTACTGATAACTTTGATCCTGCAAATAAGATAGGTGAAGGAGGCTTTGGACCAGTATACAAGGGTGTGCTGTCAGACGGTGCTGTGATTGCTGTTAAGCAGCTTTCATCTAAATCAAAGCAAGGGAATCGCGAATTCATCAATGAAATAGGCATGATATCTGCTTTGCAGCATCCAAATCTTGTGAAACTTTATGGCTGTTGCATTGAAGGAAACCAGTTGCTTCTAGTATATGAATACATGGAGAACAATAGTCTTGCTCGTGCACTTTTTGGTAAAGAGCATGAGAGGATGCAATTGGACTGGCCCAGAAGAATGAAGATTTGTGTGGGGATTGCAAAGGGATTAGCTTACCTCCATGAGGAGTCAAGGTTGAAAATAGTACACAGGGATATTAAAGCAACCAATGTCTTACTTGATAAGCATCTGAATGCCAAGATCTCTGACTTTGGTTTAGCCAAACTTGATGAAGAAGAGAATACCCATATCAGTACAAGAATAGCTGGGACAATTGGTTACATGGCTCCAGAGTATGCTATGCGGGGTTACTTGACTGACAAAGCAGATGTCTATAGCTTTGGTATTGTAGCATTAGAGATTGTTAGTGGAAAGAGCAACACAAATTACAGGCCAAAGGAGGAGTTTGTGTATCTTTTGGATTGGGCCTATGTTCTCCAAGAGCAAGGAAATCTTCTGGATTTGGTGGATCCAAGTCTTGGTTCAAAGTACTCCTCCGAAGAGGCCATGAGAATGCTACAGTTAGCACTCTTGTGTACCAATCCTTCTCCCACTCTTAGACCACCTATGTCATCGGTAGTGAGCATGCTTGAGGGAAAAACTCCAATTCAAGCACCACCAATAATCAGAGGCAGTGACAATGCACAAGATGCAAGGTTCAAAGCCCTTGAGTTCTTATCACAAGACAGCCAAACTAATGTTTCTTCTGCTTTCTCACAAGATAGTATAGAGCAAAGAAGCAAGTCAATGGGGGCACCATGGGTTGATTCCACCATATCTGTAGCAAGTAGAACCGATCATTCTTCTGATAAACTTATTACAAGTCCAAATGACGAGTGCTTCGAAGTTGGGGCAGTCAACTCACCAAATTCAAATTCTTTTGTAAAGGATATGAACAAAAACTAG 2292 0.4088 MAQFQKALDASHRLKFCKSSLPLSLLGNRFTGSIPSEISDMTSLQELTSSPEPWKNEQLTEIRSELQHADWSNPRLISGPGKNKLLHGIVIITEQELSFQPLSLSKHFKGQPCPGKPRCKCLDLESDHDFINYNVHSLFINCGGPEIEFEGNEYEADLNLRGISNYVVSDDGKWAYSSTGVYLGRDKADYVANNRFNLTINGSEYYHTARMAPLYLHYYGLCMLNGNYKVKLHFAEITFSDDNAFTSLGKRVFDVSIQGFKYLKDFNIVEEAGGVGKGITKEFNVNVTHNTLEIHLSWAGKGTNAIPERGIYGPLISAITVTPNFKVPSHGLSTGAIAGIVVGICVFIILILLALWKMGFLCGKDETDQGLKTGYFSLRQIKAATDNFDPANKIGEGGFGPVYKGVLSDGAVIAVKQLSSKSKQGNREFINEIGMISALQHPNLVKLYGCCIEGNQLLLVYEYMENNSLARALFGKEHERMQLDWPRRMKICVGIAKGLAYLHEESRLKIVHRDIKATNVLLDKHLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLDLVDPSLGSKYSSEEAMRMLQLALLCTNPSPTLRPPMSSVVSMLEGKTPIQAPPIIRGSDNAQDARFKALEFLSQDSQTNVSSAFSQDSIEQRSKSMGAPWVDSTISVASRTDHSSDKLITSPNDECFEVGAVNSPNSNSFVKDMNKN 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01918 763 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 135 324 - -
Vimu4g01918 763 Gene3D Transferase(Phosphotransferase) domain 1 464 667 - -
Vimu4g01918 763 Pfam Protein tyrosine and serine/threonine kinase 392 657 IPR001245 GO:0004672|GO:0006468
Vimu4g01918 763 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 23 692 - -
Vimu4g01918 763 CDD STKc_IRAK 394 661 - -
Vimu4g01918 763 SUPERFAMILY Protein kinase-like (PK-like) 373 660 IPR011009 -
Vimu4g01918 763 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672|GO:0006468
Vimu4g01918 763 Pfam Malectin domain 138 319 IPR021720 -
Vimu4g01918 763 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 360 463 - -
Vimu4g01918 763 Gene3D - 136 324 - -
Vimu4g01918 763 SMART serkin_6 388 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01918 763 ProSiteProfiles Protein kinase domain profile. 388 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01918 763 FunFam Putative LRR receptor-like serine/threonine-protein kinase 464 670 - -
Vimu4g01918 763 Gene3D Phosphorylase Kinase; domain 1 364 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01918 Vimu-Chr4 21131519 21137567 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01918 137 722 Receptor kinase-like Gene Family AT1G53430 68.614 0.0 820
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu4g01918 PK_Tyr_Ser-Thr 2.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01918 - - gmx:121173337 1076.62