Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01899 ATGGAGAATCAGGCTTCGAATGGAAGAAAAGCAATGGAAGAAGAGCTCAACAAAGGGCGTGACACAGCAAACCAGTTACTCGAAATACTTGTTCATAAATCTAACAGTCGTCATACAGATGCAGAAGTAGAAGGGCTAGTGCTACCATTTGCTGAGGATCTTGCTCGCAAGGTACTGATATCGTTCTCAAATACCCTTTTACTGTTGAGCACTCAAAGTGATGTTTCCGATGGTGTTGTTATGCCTGTCATTGTCAATGATGTCTCTTCGTCCCTCATATGCCCTAATCTTGAGGATAAGGATGGGGTTCGCAAGGGTTCCATCAACGCTAAAAGACGAAGAATGTCCAACAAAAGAAATGCACCAACATGGGAGAAGAACAGCACACACCTGATTGAAGATGGCTATATATGGAGAAAGTACGGACAGAAAATGACCATCAATGCAAAATACCTCAGGACGTACTACAGATGCACTCACAAGTATGATCAGGGTTGTCCAGCAACCAAACAGGTTCAAAGGATTCAAGAGAACCCTCCATTGTACCGAACAACTTATTATGGTCATCACAATTGCAAAATCTCTTTAAGTCCAGAAATAATGTTGGAACCAGCTTCTTCTTCTGACTCTTCTGTGTTCCTTAGCTTCAGTACCACCTTCCCGACCAAAGAAAAATACCAGTTTTCATCATCAGTTTTTTCATCCACGAAACAGGAGCCTATGGAAGTGATTCCGGATGACTGTGGTATACAAAACCAATTACCTTCTTCAGATTACAATCTGTTAAGTGACTATGAACTTGATTTCAATTGTTTGAGGCATGACACTGTGCAGTCTATGCCATCCTCCACTGAATCTTTTCTATTTGATAAAGTTTGTGGGAGTGATATGGATTTTGATGTCTAG 906 0.4117 MENQASNGRKAMEEELNKGRDTANQLLEILVHKSNSRHTDAEVEGLVLPFAEDLARKVLISFSNTLLLLSTQSDVSDGVVMPVIVNDVSSSLICPNLEDKDGVRKGSINAKRRRMSNKRNAPTWEKNSTHLIEDGYIWRKYGQKMTINAKYLRTYYRCTHKYDQGCPATKQVQRIQENPPLYRTTYYGHHNCKISLSPEIMLEPASSSDSSVFLSFSTTFPTKEKYQFSSSVFSSTKQEPMEVIPDDCGIQNQLPSSDYNLLSDYELDFNCLRHDTVQSMPSSTESFLFDKVCGSDMDFDV 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01899 301 SUPERFAMILY WRKY DNA-binding domain 128 194 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu4g01899 301 Coils Coil 9 29 - -
Vimu4g01899 301 Gene3D WRKY domain 119 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu4g01899 301 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 215 IPR044810 GO:0003700
Vimu4g01899 301 Pfam WRKY DNA -binding domain 133 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu4g01899 301 SMART WRKY_cls 132 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu4g01899 301 ProSiteProfiles WRKY domain profile. 127 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01899 Vimu-Chr4 20932737 20934567 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01899 15 192 WRKY Transcription Factor Family AT3G56400 37.158 3.02e-31 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu4g01899 WRKY 2.5e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01899 - - gmx:102663141 381.333