Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01897 ATGGTGTCTGTCTCTCTGTTTGGCGGCCATAACAGGAATAGTGTTATGGCAAGAAGGAAAATGGAGAATCAGATTCCAAATGGCAAAAGGGCAATGGAAGAAGAGCTGAACAGAGGGCGTGACATGGCAAATCAGTTGCTTGAAGTTCTTGCTTATGACAAATCAATCACTCATCTTCAAAAGGAAGAAGAAGGGTCATCAAAGTCAGTGTTACCATTTGTTGAAGATCTTGTGCGCAAGGTTCTGTGTTCATTCACAAACACCCTTCTGCTTTTGAACTCCAGCAACGATGTTTCCCATGAGCTGCTGCCTTCCATCACTCTCAGAGATGTCTCTTCTTCCACCACCACTTCCCCAAAGAACTTGGAATCTGTCGATGAAACTTGCAAGAATCGCAGTATTCTCACCACTGAAAACCGAAGAAGAGGCTACAAGAGAAAATCAATTGCTCCAAGTTGGGAGAAGAACAGCTCCATACTGATTGAAGATGGCTATGTATGGAGAAAATATGGACAGAAAATGACATTGAACGCCAAATACCTCAGGAGCTACTACAGGTGCACTCATAAGAATGATCAGGGATGCCAAGCAATGAAACAGGTGCAGAGAATTCAAGATGTTCCTCCTTTGTACCGAACAACCTATTACGGCCATCATACTTGTAAAAGCCGTATGAATTCTGAGATTGTTTTGGAACCTCTTTCTCCCTCTCCATCTTCCACGTTACTTAGCTTTAATAGCAGCTCTCGTTGCAAACAAGAAAACCCGTTTCCCTCATCACTGCTTGCTTCAACCAAACATGAGCTCGTGGAAGTGATTCATGATGAACATAGTGCTCAGAATCAATTATCCTCTCTTGAAGACATCTTATTACATGATTGTGAAGTTGATTGCGATTATTCAAGGGGTGTGGCTAATATGCTATCATCCGCTGAATCCGTTGAATTTGAGAATGTTTTTATGAGCAGTTTGGATTTTGTTAGCTAG 987 0.4205 MVSVSLFGGHNRNSVMARRKMENQIPNGKRAMEEELNRGRDMANQLLEVLAYDKSITHLQKEEEGSSKSVLPFVEDLVRKVLCSFTNTLLLLNSSNDVSHELLPSITLRDVSSSTTTSPKNLESVDETCKNRSILTTENRRRGYKRKSIAPSWEKNSSILIEDGYVWRKYGQKMTLNAKYLRSYYRCTHKNDQGCQAMKQVQRIQDVPPLYRTTYYGHHTCKSRMNSEIVLEPLSPSPSSTLLSFNSSSRCKQENPFPSSLLASTKHELVEVIHDEHSAQNQLSSLEDILLHDCEVDCDYSRGVANMLSSAESVEFENVFMSSLDFVS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01897 328 ProSiteProfiles WRKY domain profile. 156 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu4g01897 328 Pfam WRKY DNA -binding domain 162 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu4g01897 328 Gene3D WRKY domain 147 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu4g01897 328 SMART WRKY_cls 161 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu4g01897 328 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 36 246 IPR044810 GO:0003700
Vimu4g01897 328 SUPERFAMILY WRKY DNA-binding domain 159 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01897 Vimu-Chr4 20918310 20920500 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01897 35 223 WRKY Transcription Factor Family AT3G56400 37.895 3.68e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu4g01897 WRKY 1.6e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01897 - - var:108332714 586.26