Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01896 ATGGAGACTCAGTTTTCAAATGGAAAAAAGGCAATGGAAGAAGAATTGATGAGAGGGCGTGACATGGCAAACCAGTTACTTGATGCACTTGGTCATGATAAATTGAACACTCATCTTCAAGATGAGGGTAGGTCAAAGTCAGTGTTACCATTTGTTGAAGATCTTGTGCGCAAGGTCTTGTGCTCATTCACAAATACTCTTTTGCTTTTGAACTCCAATGAAACGACACCGTCTCTCTCATCATCAACCAATTGCCCTGAGATGGAGTCTCTGCATGAAACCTGCAAGAGTCGCAACATTCTCAACACTAATAATCAAAGAAGGTGCTACAAGAGAAAATCAATTGCGCCAAGTTGGGAGAAGGAGAGCTCCATACTGATTGAAGATGGCTATGCATGGAGAAAGAGCTACTACAGGTGCACTTACAAGACTGATCAGAGATGCTCAGCAATGAAACAGGTGCAGAGGATTCAAGATGATCCTCCTTTGTACCGAACAACCTATTATGGGCATCACACTTGTCGAAGCCCTGCTAATCCCGAGATTGTTCTGGAACCTTTTTCTCCTTCTGCATCTTCCACGTTACTTAGCTTTGATAACAGCCTTCATAGCAAACAAGAAAACCCGTTTCCCTCACCACTGCTTGCATCAATCAAGCAGGAGCCTCAGAAAGTGATTCACGATGAACATGGTGCTCAAAACCAGTTGTCTGTGTTAGAGAACCTCCTATTATACGATTATGATATTTCCTTTGATTATTCGAGGAATGTCACTTTGCTGTCGTCGGCTGAATCCGTTCAATTAGAGAATGTTTTTGGACAGTTTGGATTTTGA 834 0.4233 METQFSNGKKAMEEELMRGRDMANQLLDALGHDKLNTHLQDEGRSKSVLPFVEDLVRKVLCSFTNTLLLLNSNETTPSLSSSTNCPEMESLHETCKSRNILNTNNQRRCYKRKSIAPSWEKESSILIEDGYAWRKSYYRCTYKTDQRCSAMKQVQRIQDDPPLYRTTYYGHHTCRSPANPEIVLEPFSPSASSTLLSFDNSLHSKQENPFPSPLLASIKQEPQKVIHDEHGAQNQLSVLENLLLYDYDISFDYSRNVTLLSSAESVQLENVFGQFGF 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01896 277 SMART WRKY_cls 127 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu4g01896 277 Pfam WRKY DNA -binding domain 131 175 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu4g01896 277 Gene3D WRKY domain 113 178 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu4g01896 277 ProSiteProfiles WRKY domain profile. 122 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu4g01896 277 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 18 192 IPR044810 GO:0003700
Vimu4g01896 277 SUPERFAMILY WRKY DNA-binding domain 125 177 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01896 Vimu-Chr4 20885607 20887120 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01896 22 248 WRKY Transcription Factor Family AT3G56400 31.727 7.46e-23 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu4g01896 WRKY 1.1e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01896 - - gmx:100792193 397.897