Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01895 ATGATATCATTTCCTTGTTGCTCAGATTTTCACAAGCAGTTTGTTCCATCCAAGGTTTGTTGCAAAGGTCTGCAATCTCTTCACCCTTCCATCACAGAAATGGAGGATCTTCCCTCAAATGGAAGAAAGGCAATAGAAGAAGAACTAATCAAAGGGCGTGGCATAGCAAACCAGTTACTTGAAGTACTTGTTCATAAATCCAACACTGCAGATCTTGAAGGGTCAATGCTTCCATTTGCTGAAGATCTCGTGCGCAAGGTGCTGTGTTCTTTCACAAACACCCTCTTGCTTTTGAACACCGATCATTGTTATTCCTCCAACCACGCTGTTATTCCTCTCCTTACCAAAGATGCCACTTTCCAAAACCCTCACCACATCAAGGATGAGCCTTGCAAGAGCTTCTTCCATCCCAGAAAAAGAAGAGGCTGCTACAAGAGAAAATCAAGTGCACCAACATGGGAGACAAACAACTCAATTCTTATGGAAGATGGCTATGAATGGAGAAAGTATGGACAAAAGATAACAATGAATGCAAAATACCTAAGGAAGTACTATAGATGCACTCACAAATATGATGAGGGTTGTCCAGCAATCAAACAGGTTCAGAGAATTCAAGAGGAACCACCATTGTACAGGACAACATATTATGGCCAACACAATTGCAAAGGTTCTTTAAGTACAGAGATAATGTTTGAAACAGCTTCTTCTTCTGAGTCTCCCATGTTTTTTAGCTTCAGTAGCCCTTTCCATACCAAGGAACAATACCAATTACATTCATCTTCAGTTTTTCAATCAGCGAAACAGGAGCCTCTGGAAGTGATTCCAGATGATGATCATGTTGTTCACAAGCAATTACACTCATCAGATTACCACCTGTTATGTGAGTATGAGTCTGATTTCAATTATTCCAGACATGGTACTATGCTATCATCTGCAGAATCGGTTCCATTAGTTAATGGGAACAGTTTGCATTTTGATGCCTAG 984 0.4045 MISFPCCSDFHKQFVPSKVCCKGLQSLHPSITEMEDLPSNGRKAIEEELIKGRGIANQLLEVLVHKSNTADLEGSMLPFAEDLVRKVLCSFTNTLLLLNTDHCYSSNHAVIPLLTKDATFQNPHHIKDEPCKSFFHPRKRRGCYKRKSSAPTWETNNSILMEDGYEWRKYGQKITMNAKYLRKYYRCTHKYDEGCPAIKQVQRIQEEPPLYRTTYYGQHNCKGSLSTEIMFETASSSESPMFFSFSSPFHTKEQYQLHSSSVFQSAKQEPLEVIPDDDHVVHKQLHSSDYHLLCEYESDFNYSRHGTMLSSAESVPLVNGNSLHFDA 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01895 327 SMART WRKY_cls 161 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu4g01895 327 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 34 245 IPR044810 GO:0003700
Vimu4g01895 327 SUPERFAMILY WRKY DNA-binding domain 157 222 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu4g01895 327 Gene3D WRKY domain 131 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu4g01895 327 ProSiteProfiles WRKY domain profile. 156 220 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu4g01895 327 Pfam WRKY DNA -binding domain 162 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01895 Vimu-Chr4 20854881 20857411 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01895 45 227 WRKY Transcription Factor Family AT3G56400 37.634 8.30e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu4g01895 WRKY 8.4e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01895 - - gmx:102663141 349.747