Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01883 ATGAATGGAGATGTGTATAGCTTTGGGATACTTATGCTGGAAATGCTTACTGGAAGAAGGCCTACTGATGAAATCTTTCAAGATGGTCAAAATTTGCATAAGTTTGTAGCAAATTCATTTCCTGAAAATCTCTTACAAATATTGGATCCATTGCTTGTAGTAAAAGAAGCAGAATTAAGCACAAAAGAAGAAATTCAGAATTTTACTCCAACTACAGAAGTGTGCTTAGTTTCACTGTTCCATATTGGACTTGCTTGTGTAAAGGAATCACCAAAAGAAAGGATCAGCATGGTGGATGTTACTAGAGAGCTGAGTAAAATCAAAAGAGCCTTTATTTCTGGTAAGGTTAAGGTCAAAAGGCATGGCTTCATAACTACTTCAAGAACAGATGCGTCTCTAGTATGA 405 0.3605 MNGDVYSFGILMLEMLTGRRPTDEIFQDGQNLHKFVANSFPENLLQILDPLLVVKEAELSTKEEIQNFTPTTEVCLVSLFHIGLACVKESPKERISMVDVTRELSKIKRAFISGKVKVKRHGFITTSRTDASLV 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01883 134 Gene3D Transferase(Phosphotransferase) domain 1 1 109 - -
Vimu4g01883 134 ProSiteProfiles Protein kinase domain profile. 1 112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01883 134 SUPERFAMILY Protein kinase-like (PK-like) 3 104 IPR011009 -
Vimu4g01883 134 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 3 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01883 Vimu-Chr4 20702887 20703546 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01883 1 111 Receptor kinase-like Gene Family AT3G47570 40.541 9.04e-20 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vimu4g01883 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01883 - - ccaj:109801600 168.318