Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01882 TTGAACCCGCAGTACTTTACACCCAACATCAATGTCTTTGCCTTAGGAGACGAGACTGATCATCTGTCATTGCTCAAATTCAAGGAATCCATATCCACTGATCCATATGGAATGTTGCTATCTTGGAATACTTCTACTCACTTTTGTAATTGGCATGGAATCAGATGCAATCTCACGCTTCAAAGAGTTACAGGCTTGAACTTGCAAGGATACAAGTTGAAGGGATCGATATCACCTTATGTAGGAAATCTCTCTCATTTGAGAATATTTGACCTTGGAAACAACAGCTTCCATGGGAAAATCCCACCAGAACTGGGACGCTTGTCACAACTGCGGCTACTATCTGTTGGAAATAACTCATTGGAAGGGAAAATTCCTACAAACTTGACGGGTTGCACTAGCCTCAGAGGCTTAAGGTTGCATGGGAACAATCTCATTGGTAAAATACCAATTCAAATCGCCTCACTTGGGAAGCTTCAATATTTGCTGCTCTATAGCAACTGGTTAATTGGGGGAATCCCATCATTCATAGGTAATCTTTCATCCCTAACTGTTCTTTCTGTGGGTAATAACAACTTAGGGGGAGATATTCCACAAGAACTATGTCATCTAAAAAACTTGTCATTTTTATCACTTCCTGTAAGCAAACTCACTGGAACATTTCCTTCTTGTCTTTATAATATTTCATCTCTTGTTGCAATCTCAGCTACAAAAAACCAGCTTAATGGTTCTCTTCCACCTAACATGTTTCACACCCTCCCCAATCTCCAAGTACTAGAACTTAGTGAAAATAAATTCTCAGGACTAATCCCACCCTCCATCACAAACTCATCTTTACTTTTTATACTTGATATGAGTTTTAACAGTTTTGTGGGACAAGTTCCAAGTCTGGGAAAGCTACAAGATCTTCTCCTTTTATCATTTTCTTCAAACAATCTTGGCAACAATTCAACTTATGATTTGGAGTTTCTAAAATCATTGACAAATTGTAGTAAGTTGCACATATTAGGTATATCCGAAAATAACTTTGGAGGTCATTTACCTGATACCTTGGGAAACTTATCCACTCAGCTCAGTCAACTAAGTCTCGGGGGTAATCAAATATCAGGAAAAATCCCTGCAGCAATAGGAAATCTTGTTGACTTAACTCTCTTGACTATCTATGATAGCCGCATGGAAGGGATTATTCCATCAACTTTTGGGAAGTTTCGAAAGATGGAAGTGTTAGGCTTAAGGGGAAACGAATTATCGGGAGAGATAGGAGCCTTCATAGGCAACCTTAGTCATCTGTTCTATTTGGAAATGGGAGCAAACATGTTACAAGGGACTATTCCTCCAAGCATAGGAAATTGCCAGAAGTTACAATACTTAAGCCTTGCCCAAAACAACCTTAAAGGAACAATACCTTTGGAGGTTTTTAATCTTTCCTCTCTGACAAACTTACTGGATTTGTCAGAAAATTCATTGAGTGGCTACATACCTAAAGAAGTGGGAAACCTTAAAAATATTGATATTCTAGTTATGTCTAGGAATCATTTGTCTGGTAACATTCCTGGAACTATTGCGGAATGCATAATGTTGGAGTACCTGTTTTTGCAAGGTAATTCTTTGGATGGAATCATACCATTCTCTTTGGCATCACTCAAAGGTCTTCGGAGTCTAGACTTATCACAAAATCGCTTATCTGGGTCAATTCCATATGTTCTGCAAAACATTTCTTTCTTGGAATATTTCAATGTATCGTATAACATGTTAGAGGGAGAGGTACCAACTGAAGGTGTCTTTCGGAATGCAAGTGAGGTAGTGGTGACTGGAAATAGTAAGCTTTGTGGAGGCATTTCAGAATTGCATCTTCCACCATGCCCTGTCAAAGTTAAGAAACTTGTAAAACACCACAAGTTTAGGCTGATACCAGTGTTAGTCAGCGCGATTGTTTTTCTTCTCATACTGTCAATTATTCTAACTTTCTACTGGATCAGGAAAAGGGGTAAGAAATCATCTTTGGATTCACCAACAATTGCCCAGTTGGCTAAAGTTTCATACCAGAGCTTACACAATGCAACCGATGGTTTCTCAACTGCAAACTTGATAGGGTCTGGAAATTTTAGCTCTGTCTATAAAGGAAATCTTGAGTTAGAAGACAAAGTTGTTGCCATAAAGGTCCTAAACCTTCAAAGGAAAGGAGCTCACAAGAGTTTCTCTGCTGAATGCAATGCACTCAAAAATGTTAAACATCGAAATCTGGTTCCAATTTTAACATGTTGTTCCAGCACAGATTACAGAGGTCAAGAATTTAAAGCTCTAATTTTTGAGTACATGAAAAATGGGAGTTTAGAGCAATGGTTGCATCCGAGGACACTAGTTACAGATAATCCAAGAATATTGAAGCTCGACCAAAGATTAAATATCATGATTGATGTTGCTTCAGCATTGCATTATCTTCATCATGAATGTGAGCAATCTATCATTCATTGTGATTTAAAGCCAAACAATGTCCTTTTTGATGATGACATGATCGCCCATGTGAGTGATTTTGGCATAGCAAGACTTCTGTCAACCATCAACAATACCACTTCTAAGAAATCAAGTACACTAGGCATAAAAGGGACCATTGGCTATGCTCCTCCAGGCACGTTCTAA 2640 0.3848 MNPQYFTPNINVFALGDETDHLSLLKFKESISTDPYGMLLSWNTSTHFCNWHGIRCNLTLQRVTGLNLQGYKLKGSISPYVGNLSHLRIFDLGNNSFHGKIPPELGRLSQLRLLSVGNNSLEGKIPTNLTGCTSLRGLRLHGNNLIGKIPIQIASLGKLQYLLLYSNWLIGGIPSFIGNLSSLTVLSVGNNNLGGDIPQELCHLKNLSFLSLPVSKLTGTFPSCLYNISSLVAISATKNQLNGSLPPNMFHTLPNLQVLELSENKFSGLIPPSITNSSLLFILDMSFNSFVGQVPSLGKLQDLLLLSFSSNNLGNNSTYDLEFLKSLTNCSKLHILGISENNFGGHLPDTLGNLSTQLSQLSLGGNQISGKIPAAIGNLVDLTLLTIYDSRMEGIIPSTFGKFRKMEVLGLRGNELSGEIGAFIGNLSHLFYLEMGANMLQGTIPPSIGNCQKLQYLSLAQNNLKGTIPLEVFNLSSLTNLLDLSENSLSGYIPKEVGNLKNIDILVMSRNHLSGNIPGTIAECIMLEYLFLQGNSLDGIIPFSLASLKGLRSLDLSQNRLSGSIPYVLQNISFLEYFNVSYNMLEGEVPTEGVFRNASEVVVTGNSKLCGGISELHLPPCPVKVKKLVKHHKFRLIPVLVSAIVFLLILSIILTFYWIRKRGKKSSLDSPTIAQLAKVSYQSLHNATDGFSTANLIGSGNFSSVYKGNLELEDKVVAIKVLNLQRKGAHKSFSAECNALKNVKHRNLVPILTCCSSTDYRGQEFKALIFEYMKNGSLEQWLHPRTLVTDNPRILKLDQRLNIMIDVASALHYLHHECEQSIIHCDLKPNNVLFDDDMIAHVSDFGIARLLSTINNTTSKKSSTLGIKGTIGYAPPGTF 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01882 879 FunFam LRR receptor-like serine/threonine-protein kinase EFR 320 627 - -
Vimu4g01882 879 SMART LRR_sd22_2 451 472 - -
Vimu4g01882 879 SMART LRR_sd22_2 180 209 - -
Vimu4g01882 879 SMART LRR_sd22_2 108 131 - -
Vimu4g01882 879 SMART LRR_sd22_2 548 574 - -
Vimu4g01882 879 SMART LRR_sd22_2 355 381 - -
Vimu4g01882 879 PANTHER LEUCINE RICH REPEAT KINASE 2 325 876 - -
Vimu4g01882 879 Gene3D Ribonuclease Inhibitor 229 299 IPR032675 -
Vimu4g01882 879 Gene3D Ribonuclease Inhibitor 171 228 IPR032675 -
Vimu4g01882 879 Gene3D Transferase(Phosphotransferase) domain 1 773 879 - -
Vimu4g01882 879 SMART LRR_typ_2 475 500 IPR003591 -
Vimu4g01882 879 SMART LRR_typ_2 84 108 IPR003591 -
Vimu4g01882 879 SMART LRR_typ_2 548 571 IPR003591 -
Vimu4g01882 879 SMART LRR_typ_2 180 204 IPR003591 -
Vimu4g01882 879 SMART LRR_typ_2 427 451 IPR003591 -
Vimu4g01882 879 SMART LRR_typ_2 253 277 IPR003591 -
Vimu4g01882 879 FunFam LRR receptor-like serine/threonine-protein kinase EFR 662 772 - -
Vimu4g01882 879 ProSitePatterns Protein kinases ATP-binding region signature. 697 720 IPR017441 GO:0005524
Vimu4g01882 879 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 57 319 - -
Vimu4g01882 879 ProSitePatterns Serine/Threonine protein kinases active-site signature. 822 834 IPR008271 GO:0004672|GO:0006468
Vimu4g01882 879 SMART serkin_6 691 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01882 879 SUPERFAMILY L domain-like 356 611 - -
Vimu4g01882 879 Gene3D Ribonuclease Inhibitor 17 170 IPR032675 -
Vimu4g01882 879 SUPERFAMILY Protein kinase-like (PK-like) 666 876 IPR011009 -
Vimu4g01882 879 Pfam Leucine rich repeat N-terminal domain 18 57 IPR013210 -
Vimu4g01882 879 SUPERFAMILY L domain-like 18 313 - -
Vimu4g01882 879 Gene3D Phosphorylase Kinase; domain 1 672 772 - -
Vimu4g01882 879 ProSiteProfiles Protein kinase domain profile. 691 879 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01882 879 Pfam Protein kinase domain 693 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01882 879 Pfam Leucine rich repeat 527 585 IPR001611 GO:0005515
Vimu4g01882 879 Gene3D Ribonuclease Inhibitor 300 628 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01882 Vimu-Chr4 20700121 20702760 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01882 17 876 Receptor kinase-like Gene Family AT3G47570 46.269 0.0 733
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vimu4g01882 Pkinase 4.9e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01882 - - gmx:100801459 1238.79