Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01869 ATGAAGAGGAACAATTTCATCAAAGACTACACTCATCACACTTGTTCCAACAACAACCCATCAAAAGACTTCACCCATGTTGTCAACTGCTACACCAAGCAGAACCAGATGGCTAAAGACTTGTGGGAATGCAGCACCAACTCTCACAGCAATGCAGATCAGGACTATGTCAATGGCTTCCCTTGGCCTCCAAGATCATACACTTGTAGCTTCTGCAGGAAGGAGTTTAAGTCTGCTCAGGCTCTTGGTGGTCACATGAATGTTCATAGGAGGGATAGAGCAAGGTTGAGGCAGTCACCCCCAGCTGAAGGTCAAGCCCATATGTTCAACCTTAACCTTGACCCTACCACAACAAACCCTAACAACTCAACCTCATCTTGGTCCTTGTTACCACCATCTTCATCTTCGACAACTCTCAAACCTGTCACTTGCACATTACCCTTGTTTGTTTCTCCCACTCCTCCTTCACCTTCTTCTGACTTGAAGAGATGGGTTGTTGTGGATGGCATTCTGTTGAACCCTTTGAGCAAAAACACCCCAGAGCACTCTAAGTCAAAGATTCCAGAATCTTTATCAGCCGGGGCTGGAGAATATGATCATGCTTTTGCAAGAGAAGATGGGTGCACAGTGTTGAAGAAAGGAGAAATTCTGAGGATGGACTTGGAGATAGGTTTGCCTAGAACTTATGATTTAGATCTGGAGCTTCGTTTGGGTACTACTTACTCTTAG 729 0.4513 MKRNNFIKDYTHHTCSNNNPSKDFTHVVNCYTKQNQMAKDLWECSTNSHSNADQDYVNGFPWPPRSYTCSFCRKEFKSAQALGGHMNVHRRDRARLRQSPPAEGQAHMFNLNLDPTTTNPNNSTSSWSLLPPSSSSTTLKPVTCTLPLFVSPTPPSPSSDLKRWVVVDGILLNPLSKNTPEHSKSKIPESLSAGAGEYDHAFAREDGCTVLKKGEILRMDLEIGLPRTYDLDLELRLGTTYS 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01869 242 PANTHER OS07G0101800 PROTEIN 42 239 - -
Vimu4g01869 242 Gene3D Classic Zinc Finger 63 111 - -
Vimu4g01869 242 Pfam C2H2-type zinc finger 67 91 - -
Vimu4g01869 242 MobiDBLite consensus disorder prediction 110 132 - -
Vimu4g01869 242 SMART c2h2final6 67 89 IPR013087 -
Vimu4g01869 242 MobiDBLite consensus disorder prediction 97 132 - -
Vimu4g01869 242 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Vimu4g01869 242 SUPERFAMILY beta-beta-alpha zinc fingers 64 93 IPR036236 -
Vimu4g01869 242 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 94 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01869 Vimu-Chr4 20488516 20489796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01869 42 238 C2H2 Transcription Factor Family AT3G23130 44.724 2.61e-37 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu4g01869 zf-C2H2_6 1.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01869 - - var:108333719 423.705