Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01866 ATGTCGCTGAGGAAGGTCTTTCGCACCCGCAAGTTCTCGAGATCGTTCAAGGAGGCGCCGGCGGTGGGGGCCGCCGAGGGCGGGGTAACCGGAAACGGGGTTGAACACGCGCACGAAGATGGGTGGTCCAACATGCTGCCGGAGATCCTCTGCGAGATCGTGCGCCGCGTTGACGCCGCCGAGGAGCTTTGGCCGAACCGCCAGAACGTAGTGTCGTGCGCGTGTGTGTGCAAGCGCTGGCGCGACATCACGCGTGAGGTCGTGCGTGAGCCTTTGCACACCGGGAAAATCACTTTCCCTTCATGCCTTAAACAGGTTCGAGGTCCCCTCTTCAAAAGATCAGTCTTTTTTTGTATTTTAATTTCTGGGCAGGAAGCATTCTTTTAA 387 0.5762 MSLRKVFRTRKFSRSFKEAPAVGAAEGGVTGNGVEHAHEDGWSNMLPEILCEIVRRVDAAEELWPNRQNVVSCACVCKRWRDITREVVREPLHTGKITFPSCLKQVRGPLFKRSVFFCILISGQEAFF 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01866 128 Pfam F-box domain 42 88 IPR001810 GO:0005515
Vimu4g01866 128 SUPERFAMILY F-box domain 33 85 IPR036047 GO:0005515
Vimu4g01866 128 Gene3D - 37 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01866 Vimu-Chr4 20445358 20445744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01866 1 109 TUB Transcription Factor Family AT1G53320 45.045 3.12e-26 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01866 K19600 - gmx:100801919 160.999