Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01865 ATGGGCTCGGATTTTCTTGGCACCAACTTCACGATTTATGACAGCCAGCCACCCCATAGTGGTGCAAAACCATCAAGTGGCAGGGCCAGTCGGCGGTTTGCCAGCAAGCAGATAAGCCCGCAGGTTCCTGCTGGTAACTTTGAGGTGGGGCAGGTGTCCTACAAGTTCAACCTGTTGAAATCAAGAGGGCCAAGGAGAATGGTTTGCTCTCTGAAGTCTCCCGTGACTCCTTTCAAACCTATAGGTGAAACTTCAGAAAGCACATCTCTTGATGGCCATAAGATGCACGATAAAGAACACCCTGCTTCTGGCCACACAATCTTGAAGAATAAAGCTCCCAGGTGGCATGAGCATTTGCAATGCTGGTGCTTGAATTTCCATGGTCGAGTGACAGTGGCCTCAGTGAAGAACTTTCAGCTGGTTGCAACAGTGGACCAAAGCCAGCCAGGAGGGAAAGGGGATGAGGAAACAGTTCTTCTCCAGTTTGGTAAAGTAGGGGATGATACTTTCACCATGGATTATAGGCAGCCCTTATCTGCATTCCAGGCTTTTGCCATTTGCTTAACTAGCTTTGGCACTAAACTTGCTTGTGAGTAA 597 0.4858 MGSDFLGTNFTIYDSQPPHSGAKPSSGRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKSPVTPFKPIGETSESTSLDGHKMHDKEHPASGHTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01865 198 MobiDBLite consensus disorder prediction 1 37 - -
Vimu4g01865 198 Gene3D Tubby Protein; Chain A 1 198 IPR025659 -
Vimu4g01865 198 MobiDBLite consensus disorder prediction 80 103 - -
Vimu4g01865 198 SUPERFAMILY Tubby C-terminal domain-like 3 198 IPR025659 -
Vimu4g01865 198 ProSitePatterns Tub family signature 2. 183 198 IPR018066 -
Vimu4g01865 198 PRINTS Tubby superfamily signature 108 125 IPR000007 -
Vimu4g01865 198 PRINTS Tubby superfamily signature 46 73 IPR000007 -
Vimu4g01865 198 PRINTS Tubby superfamily signature 126 142 IPR000007 -
Vimu4g01865 198 PRINTS Tubby superfamily signature 176 198 IPR000007 -
Vimu4g01865 198 PRINTS Tubby superfamily signature 155 174 IPR000007 -
Vimu4g01865 198 Pfam Tub family 2 193 IPR000007 -
Vimu4g01865 198 MobiDBLite consensus disorder prediction 89 103 - -
Vimu4g01865 198 ProSitePatterns Tub family signature 1. 126 139 IPR018066 -
Vimu4g01865 198 MobiDBLite consensus disorder prediction 1 23 - -
Vimu4g01865 198 PANTHER TUBBY-RELATED 3 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01865 Vimu-Chr4 20441430 20444898 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01865 1 198 TUB Transcription Factor Family AT1G53320 80.597 5.15e-112 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vimu4g01865 Tub 1.9e-72 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01865 K19600 - gmx:100808096 379.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g01865 4 20441430 20444898 Vimu4g01865 4 20441430 20444898 ECH