Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01843 ATGTGTAGAGCAGAAGCGTTTTTGAAGCTCCACCAGATTGATGATGCAGAAACAGTTTTGTCCCATATACCAAAACCAGAGTTGCACACCAGTTCAATTTCTCAGGCAAGATTTTTCGGGATGCTTTCTGAGGCGTATTTCTATTTTGTGAGAGCACAGATTGAGATGGCATTGGGAAGGTTCGAGAACGCCGTTACAGCTGCAGAGAAAGCGAGTCAGATTGATCCACGGAGTGTTGAAGTTGCTGTTTTGCTGAACAATGTGAGGATGGTGGCAAGGGCTCGAGTGCGTGGCAATGATCTCTTTAAATCTGAAAGGTACACCGAAGCTTGCTCGGCGTACGGAGAAGGTTTGAGACTGGATCCTTCCAATTCTGTGCTATATTGCAACAGAGCAGCTTGTTGGTTTAAGCTTGGCCAGTGGGAAAGGTCAATTGAAGACTCCAACCAAGCTTTGAACATCCAACCAAATTACACCAAGGCCCTTCTTCGAAGGGCTGCATCAAACAGCAAGCTAGAACGGTGGGAGGAAGCAGTCAAAGATTATGAGATCTTGAGGAGAGAACTTCCAAACGAAAACGAAGTTGCTGAATCTCTTTTCCATGCACAAGTTGCCCTGAAGAAATCACGTGGAGAAGAAGTATATAATTTAAAATTTGGTGGCGAAGTGGAAGAAGTATCAGGTCTGGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTGTATGTGTGGACATTGAAGAAAGCCGAGCAGTTGCAAATGCGGAGAACGTTAGAATTGTACCAACCTTCAAGATATACAAAAATGGGAGCAGAGTGAAGGAAATGGTTTGCCCAAATCGAGAGATGTTGGAACACTCGGTGAGGCATTACAGCTTTTAG 879 0.446 MCRAEAFLKLHQIDDAETVLSHIPKPELHTSSISQARFFGMLSEAYFYFVRAQIEMALGRFENAVTAAEKASQIDPRSVEVAVLLNNVRMVARARVRGNDLFKSERYTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDSNQALNIQPNYTKALLRRAASNSKLERWEEAVKDYEILRRELPNENEVAESLFHAQVALKKSRGEEVYNLKFGGEVEEVSGLEQFRAAISLPGVCVDIEESRAVANAENVRIVPTFKIYKNGSRVKEMVCPNREMLEHSVRHYSF 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01843 292 Gene3D Tetratricopeptide repeat domain 1 211 IPR011990 GO:0005515
Vimu4g01843 292 ProSiteProfiles TPR repeat profile. 125 158 IPR019734 GO:0005515
Vimu4g01843 292 Pfam Tetratricopeptide repeat 47 76 IPR019734 GO:0005515
Vimu4g01843 292 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 1 289 IPR044534 -
Vimu4g01843 292 SUPERFAMILY TPR-like 96 208 IPR011990 GO:0005515
Vimu4g01843 292 Gene3D Glutaredoxin 218 291 - -
Vimu4g01843 292 SMART tpr_5 159 192 IPR019734 GO:0005515
Vimu4g01843 292 SMART tpr_5 125 158 IPR019734 GO:0005515
Vimu4g01843 292 SMART tpr_5 45 78 IPR019734 GO:0005515
Vimu4g01843 292 SMART tpr_5 91 124 IPR019734 GO:0005515
Vimu4g01843 292 SUPERFAMILY Thioredoxin-like 221 284 IPR036249 -
Vimu4g01843 292 SUPERFAMILY TPR-like 3 85 IPR011990 GO:0005515
Vimu4g01843 292 ProSiteProfiles TPR repeat profile. 45 78 IPR019734 GO:0005515
Vimu4g01843 292 Pfam Tetratricopeptide repeat 97 147 - -
Vimu4g01843 292 CDD TRX_family 241 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01843 Vimu-Chr4 20203270 20206652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01843 90 235 U-box Gene Family AT3G07370 27.869 5.93e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01843 - - gmx:100804531 506.523