Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01840 ATGTTGATCAGCAACGAAGTAGAGGATTTGTTTGATGATAACTTTGAAGGATCTAACGAAGAAAGACAAATTTTTTCAGAGGTCTTTTCTGGTAATGACATTTTTCAGTCCAGTCAGAAATGTGTTGTTCCTGGAGTTATCAGCTTTGAACATGAATCTGCTAAAAACACATTTAAATCATTCTGCTCTAGTAACGAAAACTCAGTTGCATTGCATCCTTCGTCTTCTAGACTTACACACCCTGAAGAGGGGAACTTTATTGTAATAGAGCATTCTAAAGAGGCTGCTCCTGGATGTTTGCCAGAGAGTTTCATTTGTGAAGAACAGAATGACGAGGATGTGAATGTCAAACGAATGAAATTTTCTCTGCATGAACTTGCTTGTAGTAGATCCGATTCAGAAAAAAAATTGAGTTTACCACGACTCTCAAAAGTAGCAGTTTCTAACCTGTCTAATGCTGGTACAGGCTGTGATAGGGAACCAATTGCATTCCGGTTGGTTGAATCATCCAAACATGGTGTGATATCTAGTTGTTATCTATTGAACCATAACAATTTAAATAAACAAGCTGTTAAGGATGAGATAGATGTTACAAACTTTAACACAGCAACAGCAGACGGACATATTGCAAAAGAAGTGTCTGTAAGTAAAGCAGCTGCTTCTCCTGTTTCCCAGGAGAGCTTTGCGAGCAGGCTTGTAGTCACTAGTCCATCAATCACTGTTGTGAAGAAGTCTGGGTCTCCTTTAAATCCTGAAGAAATGCCGGAATTGACTAATGTGGACATCTCAAATTCACCCTCAACGCTACAGGAAGAGGACCCTCGTACTATTCTGCAGTTTCAGATTGTTCACTTGCTTACTATGGCAGGGTGGACTATTGAGAAGCGACAACGGCCGAGCAGGCGTTATCCAGAGTCAGTTTATAGGACCCCAAAGGGAAAGCCTATTCGGGAATTTACAAAGGCTTGGAGAATATGTGGTGAGCTATTGTCTGTTGAAAAATGCAATTTAATGTGCAGAGATTATAAGGAATGGACTGATATTAGTCAATTCTGGTCTGATCTATCCAGTGCACTGATAAATGTTGATAAAACAAAGATGCAGTCAGAAGACCCTGCTGCTGTGTTGGCTTATCGATGGTGCCTTTTGGATCCTTTTGTAGTGGTTATATTTGTTGATAGAAAGATTGGTGCCCTGAAAAAGGGGGAGGTAGTGAAAGCAACTTGGAGTTTAGTTTCTAGTAAGTATAAGGTGTCTTGTGCTCCCATTGATTCAAGCTCTGGAAATTTGAATCAGGTACCTGGAGGGTCTAACGTAAACTCTGTTCGTCAAGCAAAAATTAGAAATTCTAGAAGTCTTGATAAGCAGAGTTCAGAAAACTATCAGGAAACAGATAATATTATTGATGGACATGCGCCAATGGACATGTCAGAAGAAAATAACACATCCAGTGTAAGCTATGGCCTGGTTCATTCTCATGACTCAAGGGCTATACAACAGTCTGAGTGTAGTGAGGAAGACGGTGGGAAAATCATAGTAGATCCTGCATCTGGCAAAGATAGCACATATTCTGTTTCTAATCTTACTCTTAGAAAGAAAATGAGAAGGAAGTGCAAAAGGGTATCTGAAATTAGAATGAGTATGTCCTACCATGGTGACATGCTGGGCTCAACTGTCACTAACCAGGTGCCGTCACTAGATGGTGAAGCATGTGGTTTGGAAGAGGTCAAGAATTATCTAGATGACAATACTGGAAGGAAAAGAAGCTGCAGAAAGTTATCATCGGCTAGTGCAGTTCAGAGAAATATCAGGAAAACAAACTGCTCCGTAAGTGGAACGGATAGGTCTAATGGATGCCAGATTAAAGATGATGATTTGTTGGTATCTGCCATATTCAGGAATAAGGACTTCGGGCCAAAGGCAATCCGGGGAAGTTCTAGAGCTAAATCCTGCAAATCAAGGGGCCAGAGAAAACTTAAAAGCCAAAAGGGTCGTTGCAGGTTGCTGCCAAGGAACCCCAGTAATGGAGGAAAGTACAATAAGGACTGTAATAGGTTTTATATGGGTTCAAGGACAATATTGTCCTGGTTGATTGATAATGGGATCATATCTTTAAATGATGTGATTCAATACCGAAATGCTAAGGATAATGTTGTCATTAAGGATGGTAGGATCACCAAAGATGGTATTATATGTATATGTTGTGGTAAGGCGCTTACATTATCTGAGTTCAAGTTGCATGCTGGGTTTACATTGAATCGCCCCTGCATGAATATTTTTATGGAGTCTGGCGAGCCCTTTACATTGTGCCTCCTTCAAGCTTGGTCAGCTGAATACAAAGCCAGGAAAAGTCTGAATCAAGCTGTGCAGGCTGAAGATAATGACAAAAATGATGATTCATGCGGGTTATGTGGTGAAGGGGGTGAGCTGATATGTTGTGATAATTGTCCATCTACTTTCCACGCAGCTTGTTTGTCCACTCAGGAGATCCCAGACGGTGACTGGTATTGTGCAAACTGCACTTGTAGGATATGTGGAAATTTGGTTATTGATAAAGACACTTCAGATCTGCAGGATTTGTTACAATGTTCACAGTGTGAACATAAATATCACGAGACATGCCTTAAAGATAGAGAAACAAGAGAAGGAGCGGCCTCAGACATTTGGTTTTGTGGGCACAGTTGTCAGGAGGTGTACACTGGACTCCAATCTCAGGTGGGGTTAGTTAATCAAGTTGCTGATGACATCTCATGGACGCTTCTTAGATGCATTCATGATGACCAAAAAGTTCATTCTGCACAGTGGTTTGCCCTAAAGGCAGTATGCAATACGAAATTAGCAGTTGCTCTTACTATCATGGAGGAGTGTTTTGTGTCGATGCTTGATCCAAGAACAGGCATCCACATGATACCTCAAGTTTTATACAACTGGGGGTCTGAGTTTGCTCGTCTGAATTTTCAAGGGTTTTACACCATGGTATTGGAAAAAAAGGATGTGTTGGTATCTGTAGCATCTATCAGGGTGCATGGAACCACAGTAGCAGAGATGCCTCTAATTGCTACTTGCAGTCGGTTTCGTCGCCAGGGAATGTGCCGTCTCCTTGTGAGTGCTATCGAGGAGATGTTAACATCTTTCAAGGTGGAAAGGCTTGTGGTATCAGCCATTCCTGATTTGGTTGAGACATGGACTAAGGGCTTTGGATTCAAACCCGTTGATGATGTTGAAAGGAAAAGATTGAATAAGTTTAACATGATGATATTTCCCGGGACAGTGTTTCTTGAGAAACCGTTACACAGGAAGATGAAAACTGAAGTTGAAACAGGACTGTGTGATGAATCAACTCAAGCAACAGATGAATCCGTCAAAGTATGCATCAGTTCTGAAGGAATGACAACTACTGACTCATTTCTACCAGATGTTGCAAACATTACCACCAATAAAGTTGAAGCAAAGTCAGAACATGAACCTGTGGACGGTAAAATTCAGTCTGACAATGAAGCTGGCAGTGATACCCTGAGAAAAGACAATACACAACCTGTTGACACTGCATTGGAAGCCAAAGAATCAACAGAAATAAGTAGTAGCTGTTTTACGGAAGAGATCATCCAGTTGACAGTGTCAGGTGGCTCAGAGAAATCTAAAGAAGAGAACAATGTGAGCGAACAGAGAACATGCAATAAAGTGGAAATGGAAAGTGACTCAGTACAGCAATCTAGTGAGAATTTTTGTGCAATCAAAGATGGTGCTGAACCAAGTATAAGGATTGTGGAGGACAAGAATATCAAAATAGGGGAGGGTCAGGAAAATGCTTTGCAGGGCCATTTTTCAAATCTATCCTGCAAAACATTTTTAGGCAGCAATTTTGACACGGATTCCAGTATTGAATGCTCAGTGATGTATGATGAAACAGCTTTTTTTGGAACATTTGCAAAGTCTGCAAGCTGA 3945 0.4094 MLISNEVEDLFDDNFEGSNEERQIFSEVFSGNDIFQSSQKCVVPGVISFEHESAKNTFKSFCSSNENSVALHPSSSRLTHPEEGNFIVIEHSKEAAPGCLPESFICEEQNDEDVNVKRMKFSLHELACSRSDSEKKLSLPRLSKVAVSNLSNAGTGCDREPIAFRLVESSKHGVISSCYLLNHNNLNKQAVKDEIDVTNFNTATADGHIAKEVSVSKAAASPVSQESFASRLVVTSPSITVVKKSGSPLNPEEMPELTNVDISNSPSTLQEEDPRTILQFQIVHLLTMAGWTIEKRQRPSRRYPESVYRTPKGKPIREFTKAWRICGELLSVEKCNLMCRDYKEWTDISQFWSDLSSALINVDKTKMQSEDPAAVLAYRWCLLDPFVVVIFVDRKIGALKKGEVVKATWSLVSSKYKVSCAPIDSSSGNLNQVPGGSNVNSVRQAKIRNSRSLDKQSSENYQETDNIIDGHAPMDMSEENNTSSVSYGLVHSHDSRAIQQSECSEEDGGKIIVDPASGKDSTYSVSNLTLRKKMRRKCKRVSEIRMSMSYHGDMLGSTVTNQVPSLDGEACGLEEVKNYLDDNTGRKRSCRKLSSASAVQRNIRKTNCSVSGTDRSNGCQIKDDDLLVSAIFRNKDFGPKAIRGSSRAKSCKSRGQRKLKSQKGRCRLLPRNPSNGGKYNKDCNRFYMGSRTILSWLIDNGIISLNDVIQYRNAKDNVVIKDGRITKDGIICICCGKALTLSEFKLHAGFTLNRPCMNIFMESGEPFTLCLLQAWSAEYKARKSLNQAVQAEDNDKNDDSCGLCGEGGELICCDNCPSTFHAACLSTQEIPDGDWYCANCTCRICGNLVIDKDTSDLQDLLQCSQCEHKYHETCLKDRETREGAASDIWFCGHSCQEVYTGLQSQVGLVNQVADDISWTLLRCIHDDQKVHSAQWFALKAVCNTKLAVALTIMEECFVSMLDPRTGIHMIPQVLYNWGSEFARLNFQGFYTMVLEKKDVLVSVASIRVHGTTVAEMPLIATCSRFRRQGMCRLLVSAIEEMLTSFKVERLVVSAIPDLVETWTKGFGFKPVDDVERKRLNKFNMMIFPGTVFLEKPLHRKMKTEVETGLCDESTQATDESVKVCISSEGMTTTDSFLPDVANITTNKVEAKSEHEPVDGKIQSDNEAGSDTLRKDNTQPVDTALEAKESTEISSSCFTEEIIQLTVSGGSEKSKEENNVSEQRTCNKVEMESDSVQQSSENFCAIKDGAEPSIRIVEDKNIKIGEGQENALQGHFSNLSCKTFLGSNFDTDSSIECSVMYDETAFFGTFAKSAS 1314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01840 1314 CDD PHD2_CHD_II 800 840 - -
Vimu4g01840 1314 MobiDBLite consensus disorder prediction 652 673 - -
Vimu4g01840 1314 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 951 1098 IPR000182 GO:0016747
Vimu4g01840 1314 SUPERFAMILY FYVE/PHD zinc finger 786 842 IPR011011 -
Vimu4g01840 1314 Gene3D - 946 1085 - -
Vimu4g01840 1314 Pfam PHD-finger 801 842 IPR019787 -
Vimu4g01840 1314 CDD PHD_SF 841 891 - -
Vimu4g01840 1314 MobiDBLite consensus disorder prediction 1148 1171 - -
Vimu4g01840 1314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 791 842 IPR013083 -
Vimu4g01840 1314 PANTHER PHD FINGER FAMILY PROTEIN 1 1238 - -
Vimu4g01840 1314 SUPERFAMILY FYVE/PHD zinc finger 841 893 IPR011011 -
Vimu4g01840 1314 SMART PHD_3 800 841 IPR001965 -
Vimu4g01840 1314 SMART PHD_3 842 896 IPR001965 -
Vimu4g01840 1314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 843 900 IPR013083 -
Vimu4g01840 1314 MobiDBLite consensus disorder prediction 1148 1180 - -
Vimu4g01840 1314 Pfam Tify domain binding domain 723 773 IPR032308 -
Vimu4g01840 1314 ProSiteProfiles Zinc finger PHD-type profile. 798 843 IPR019787 -
Vimu4g01840 1314 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 950 1074 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01840 Vimu-Chr4 20126717 20135455 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01840 1 1159 PHD Transcription Factor Family AT3G14980 39.966 0.0 769
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu4g01840 TDBD 3.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01840 - - gmx:100777440 2175.98