Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu4g01840 | ATGTTGATCAGCAACGAAGTAGAGGATTTGTTTGATGATAACTTTGAAGGATCTAACGAAGAAAGACAAATTTTTTCAGAGGTCTTTTCTGGTAATGACATTTTTCAGTCCAGTCAGAAATGTGTTGTTCCTGGAGTTATCAGCTTTGAACATGAATCTGCTAAAAACACATTTAAATCATTCTGCTCTAGTAACGAAAACTCAGTTGCATTGCATCCTTCGTCTTCTAGACTTACACACCCTGAAGAGGGGAACTTTATTGTAATAGAGCATTCTAAAGAGGCTGCTCCTGGATGTTTGCCAGAGAGTTTCATTTGTGAAGAACAGAATGACGAGGATGTGAATGTCAAACGAATGAAATTTTCTCTGCATGAACTTGCTTGTAGTAGATCCGATTCAGAAAAAAAATTGAGTTTACCACGACTCTCAAAAGTAGCAGTTTCTAACCTGTCTAATGCTGGTACAGGCTGTGATAGGGAACCAATTGCATTCCGGTTGGTTGAATCATCCAAACATGGTGTGATATCTAGTTGTTATCTATTGAACCATAACAATTTAAATAAACAAGCTGTTAAGGATGAGATAGATGTTACAAACTTTAACACAGCAACAGCAGACGGACATATTGCAAAAGAAGTGTCTGTAAGTAAAGCAGCTGCTTCTCCTGTTTCCCAGGAGAGCTTTGCGAGCAGGCTTGTAGTCACTAGTCCATCAATCACTGTTGTGAAGAAGTCTGGGTCTCCTTTAAATCCTGAAGAAATGCCGGAATTGACTAATGTGGACATCTCAAATTCACCCTCAACGCTACAGGAAGAGGACCCTCGTACTATTCTGCAGTTTCAGATTGTTCACTTGCTTACTATGGCAGGGTGGACTATTGAGAAGCGACAACGGCCGAGCAGGCGTTATCCAGAGTCAGTTTATAGGACCCCAAAGGGAAAGCCTATTCGGGAATTTACAAAGGCTTGGAGAATATGTGGTGAGCTATTGTCTGTTGAAAAATGCAATTTAATGTGCAGAGATTATAAGGAATGGACTGATATTAGTCAATTCTGGTCTGATCTATCCAGTGCACTGATAAATGTTGATAAAACAAAGATGCAGTCAGAAGACCCTGCTGCTGTGTTGGCTTATCGATGGTGCCTTTTGGATCCTTTTGTAGTGGTTATATTTGTTGATAGAAAGATTGGTGCCCTGAAAAAGGGGGAGGTAGTGAAAGCAACTTGGAGTTTAGTTTCTAGTAAGTATAAGGTGTCTTGTGCTCCCATTGATTCAAGCTCTGGAAATTTGAATCAGGTACCTGGAGGGTCTAACGTAAACTCTGTTCGTCAAGCAAAAATTAGAAATTCTAGAAGTCTTGATAAGCAGAGTTCAGAAAACTATCAGGAAACAGATAATATTATTGATGGACATGCGCCAATGGACATGTCAGAAGAAAATAACACATCCAGTGTAAGCTATGGCCTGGTTCATTCTCATGACTCAAGGGCTATACAACAGTCTGAGTGTAGTGAGGAAGACGGTGGGAAAATCATAGTAGATCCTGCATCTGGCAAAGATAGCACATATTCTGTTTCTAATCTTACTCTTAGAAAGAAAATGAGAAGGAAGTGCAAAAGGGTATCTGAAATTAGAATGAGTATGTCCTACCATGGTGACATGCTGGGCTCAACTGTCACTAACCAGGTGCCGTCACTAGATGGTGAAGCATGTGGTTTGGAAGAGGTCAAGAATTATCTAGATGACAATACTGGAAGGAAAAGAAGCTGCAGAAAGTTATCATCGGCTAGTGCAGTTCAGAGAAATATCAGGAAAACAAACTGCTCCGTAAGTGGAACGGATAGGTCTAATGGATGCCAGATTAAAGATGATGATTTGTTGGTATCTGCCATATTCAGGAATAAGGACTTCGGGCCAAAGGCAATCCGGGGAAGTTCTAGAGCTAAATCCTGCAAATCAAGGGGCCAGAGAAAACTTAAAAGCCAAAAGGGTCGTTGCAGGTTGCTGCCAAGGAACCCCAGTAATGGAGGAAAGTACAATAAGGACTGTAATAGGTTTTATATGGGTTCAAGGACAATATTGTCCTGGTTGATTGATAATGGGATCATATCTTTAAATGATGTGATTCAATACCGAAATGCTAAGGATAATGTTGTCATTAAGGATGGTAGGATCACCAAAGATGGTATTATATGTATATGTTGTGGTAAGGCGCTTACATTATCTGAGTTCAAGTTGCATGCTGGGTTTACATTGAATCGCCCCTGCATGAATATTTTTATGGAGTCTGGCGAGCCCTTTACATTGTGCCTCCTTCAAGCTTGGTCAGCTGAATACAAAGCCAGGAAAAGTCTGAATCAAGCTGTGCAGGCTGAAGATAATGACAAAAATGATGATTCATGCGGGTTATGTGGTGAAGGGGGTGAGCTGATATGTTGTGATAATTGTCCATCTACTTTCCACGCAGCTTGTTTGTCCACTCAGGAGATCCCAGACGGTGACTGGTATTGTGCAAACTGCACTTGTAGGATATGTGGAAATTTGGTTATTGATAAAGACACTTCAGATCTGCAGGATTTGTTACAATGTTCACAGTGTGAACATAAATATCACGAGACATGCCTTAAAGATAGAGAAACAAGAGAAGGAGCGGCCTCAGACATTTGGTTTTGTGGGCACAGTTGTCAGGAGGTGTACACTGGACTCCAATCTCAGGTGGGGTTAGTTAATCAAGTTGCTGATGACATCTCATGGACGCTTCTTAGATGCATTCATGATGACCAAAAAGTTCATTCTGCACAGTGGTTTGCCCTAAAGGCAGTATGCAATACGAAATTAGCAGTTGCTCTTACTATCATGGAGGAGTGTTTTGTGTCGATGCTTGATCCAAGAACAGGCATCCACATGATACCTCAAGTTTTATACAACTGGGGGTCTGAGTTTGCTCGTCTGAATTTTCAAGGGTTTTACACCATGGTATTGGAAAAAAAGGATGTGTTGGTATCTGTAGCATCTATCAGGGTGCATGGAACCACAGTAGCAGAGATGCCTCTAATTGCTACTTGCAGTCGGTTTCGTCGCCAGGGAATGTGCCGTCTCCTTGTGAGTGCTATCGAGGAGATGTTAACATCTTTCAAGGTGGAAAGGCTTGTGGTATCAGCCATTCCTGATTTGGTTGAGACATGGACTAAGGGCTTTGGATTCAAACCCGTTGATGATGTTGAAAGGAAAAGATTGAATAAGTTTAACATGATGATATTTCCCGGGACAGTGTTTCTTGAGAAACCGTTACACAGGAAGATGAAAACTGAAGTTGAAACAGGACTGTGTGATGAATCAACTCAAGCAACAGATGAATCCGTCAAAGTATGCATCAGTTCTGAAGGAATGACAACTACTGACTCATTTCTACCAGATGTTGCAAACATTACCACCAATAAAGTTGAAGCAAAGTCAGAACATGAACCTGTGGACGGTAAAATTCAGTCTGACAATGAAGCTGGCAGTGATACCCTGAGAAAAGACAATACACAACCTGTTGACACTGCATTGGAAGCCAAAGAATCAACAGAAATAAGTAGTAGCTGTTTTACGGAAGAGATCATCCAGTTGACAGTGTCAGGTGGCTCAGAGAAATCTAAAGAAGAGAACAATGTGAGCGAACAGAGAACATGCAATAAAGTGGAAATGGAAAGTGACTCAGTACAGCAATCTAGTGAGAATTTTTGTGCAATCAAAGATGGTGCTGAACCAAGTATAAGGATTGTGGAGGACAAGAATATCAAAATAGGGGAGGGTCAGGAAAATGCTTTGCAGGGCCATTTTTCAAATCTATCCTGCAAAACATTTTTAGGCAGCAATTTTGACACGGATTCCAGTATTGAATGCTCAGTGATGTATGATGAAACAGCTTTTTTTGGAACATTTGCAAAGTCTGCAAGCTGA | 3945 | 0.4094 | MLISNEVEDLFDDNFEGSNEERQIFSEVFSGNDIFQSSQKCVVPGVISFEHESAKNTFKSFCSSNENSVALHPSSSRLTHPEEGNFIVIEHSKEAAPGCLPESFICEEQNDEDVNVKRMKFSLHELACSRSDSEKKLSLPRLSKVAVSNLSNAGTGCDREPIAFRLVESSKHGVISSCYLLNHNNLNKQAVKDEIDVTNFNTATADGHIAKEVSVSKAAASPVSQESFASRLVVTSPSITVVKKSGSPLNPEEMPELTNVDISNSPSTLQEEDPRTILQFQIVHLLTMAGWTIEKRQRPSRRYPESVYRTPKGKPIREFTKAWRICGELLSVEKCNLMCRDYKEWTDISQFWSDLSSALINVDKTKMQSEDPAAVLAYRWCLLDPFVVVIFVDRKIGALKKGEVVKATWSLVSSKYKVSCAPIDSSSGNLNQVPGGSNVNSVRQAKIRNSRSLDKQSSENYQETDNIIDGHAPMDMSEENNTSSVSYGLVHSHDSRAIQQSECSEEDGGKIIVDPASGKDSTYSVSNLTLRKKMRRKCKRVSEIRMSMSYHGDMLGSTVTNQVPSLDGEACGLEEVKNYLDDNTGRKRSCRKLSSASAVQRNIRKTNCSVSGTDRSNGCQIKDDDLLVSAIFRNKDFGPKAIRGSSRAKSCKSRGQRKLKSQKGRCRLLPRNPSNGGKYNKDCNRFYMGSRTILSWLIDNGIISLNDVIQYRNAKDNVVIKDGRITKDGIICICCGKALTLSEFKLHAGFTLNRPCMNIFMESGEPFTLCLLQAWSAEYKARKSLNQAVQAEDNDKNDDSCGLCGEGGELICCDNCPSTFHAACLSTQEIPDGDWYCANCTCRICGNLVIDKDTSDLQDLLQCSQCEHKYHETCLKDRETREGAASDIWFCGHSCQEVYTGLQSQVGLVNQVADDISWTLLRCIHDDQKVHSAQWFALKAVCNTKLAVALTIMEECFVSMLDPRTGIHMIPQVLYNWGSEFARLNFQGFYTMVLEKKDVLVSVASIRVHGTTVAEMPLIATCSRFRRQGMCRLLVSAIEEMLTSFKVERLVVSAIPDLVETWTKGFGFKPVDDVERKRLNKFNMMIFPGTVFLEKPLHRKMKTEVETGLCDESTQATDESVKVCISSEGMTTTDSFLPDVANITTNKVEAKSEHEPVDGKIQSDNEAGSDTLRKDNTQPVDTALEAKESTEISSSCFTEEIIQLTVSGGSEKSKEENNVSEQRTCNKVEMESDSVQQSSENFCAIKDGAEPSIRIVEDKNIKIGEGQENALQGHFSNLSCKTFLGSNFDTDSSIECSVMYDETAFFGTFAKSAS | 1314 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu4g01840 | 1314 | CDD | PHD2_CHD_II | 800 | 840 | - | - | |
| Vimu4g01840 | 1314 | MobiDBLite | consensus disorder prediction | 652 | 673 | - | - | |
| Vimu4g01840 | 1314 | ProSiteProfiles | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 951 | 1098 | IPR000182 | GO:0016747 | |
| Vimu4g01840 | 1314 | SUPERFAMILY | FYVE/PHD zinc finger | 786 | 842 | IPR011011 | - | |
| Vimu4g01840 | 1314 | Gene3D | - | 946 | 1085 | - | - | |
| Vimu4g01840 | 1314 | Pfam | PHD-finger | 801 | 842 | IPR019787 | - | |
| Vimu4g01840 | 1314 | CDD | PHD_SF | 841 | 891 | - | - | |
| Vimu4g01840 | 1314 | MobiDBLite | consensus disorder prediction | 1148 | 1171 | - | - | |
| Vimu4g01840 | 1314 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 791 | 842 | IPR013083 | - | |
| Vimu4g01840 | 1314 | PANTHER | PHD FINGER FAMILY PROTEIN | 1 | 1238 | - | - |
Showing 1 to 10 of 18 entries
Duplication type information
Functional genes information
Transcription factors information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu4g01840 | - | - | gmx:100777440 | 2175.98 |
Showing 1 to 1 of 1 entries