Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01836 ATGGATGTGAACTGGTTTAGAAGAACATCAGGGTATGTGACACAAGATGATGCTTTATTCCCTTCACTGACTGTTAGAGAGACACTAATGTATAGTGCCATGCTGAGGCTTCCTGGGGGAAGAAAAGTTGCTGCCGTCAGAGTTGAAGAGTTGATGAAGGAGCTTGGGTTGGACCATATTGCAGATTCAAGAATTGGAGGTGGAACAGACCATGGTATATCCGGAGGAGAAAGGCGTAGAGTTTCCATTGGTGTGGACTTGGTTCATGACCCTGCTGTTATTTTGATTGATGAACCAACTTCAGGGTTGGATTCAGCATCAGCTCTTAATGTAGTCACATTGCTTAGACTTGTGGCGTTTAATCAAGGTAAGACAATTATCTTAACTATCCACCAACCTGGTTTCCGAATCTTAGAGCTGTTTGACGGCCTCATTTTGCTGGCCGATGGATTTGTGATGCATAATGGATCATTGAATCTTCTTGAAGCTAGACTCAAGTTAGCTGGACACCACATTCCCGACCATGTCAATGTCCTTGAGTTTGCTCTTGATGTCATGGAAAGCTTGGTTATACATACTTCAGAATCTGGGGACAACCAGTTTCTGCCCAAAGACAACCAAGATCATAAAATGAGAATGCAGCATTCTAAGGTTGTCAAAGTAAAGGCAATTTCATATTCAAATTGTCCTATGGAAGAGATTGCAATCCTGGGACAAAGATTTTGCTGCAACATATTCAGAACCAAGCAATTGTTTGTCACCAGAATCATACAGGCCATAGTAGCTGGTTTTGTTCTGGGGAGCATTTTTTTCAATGTTGGCAATCAACAAAGTCATGTAGCATTGCAAACAAGAAGTGGCTTCTTTGCTTTCAGCCTTACCTTTTTGTTATCATCTACAACAGAAGGCTTGCCTATTTTCTTGGATGAGAGAAGAACTTTTATGAGAGAGACCTCTGGAGGAGCTTATAGAGTTTGTTCCTATGTTTTAGCTAATGCCCTTGTTTTCCTTCCCTTCCTTCTATTGGTTGGTCTTCTGTTCTCTACTCCAGTTTATTGGCTTGTAGGATTAAGGAAAGATATCGATGGTTTCCTTTACTTCTCCTTAGTGGTTTGGTTGGTTCTACTCATGTCCAATTCTCTTGTGGCTTGTTTCAGCGCTCTGGTGCCAAATTTCATCCTGGGAACCTCAGTGATTGCAGGTCTAATGGGGTCTTTCTTTTTATTCTCAGGGTATTTCATATCTGAGGAAAAAATACCAAGTTATTGGATTTTTATGCACTATTTGAGCCTATTCAAGTATCCATTTGAGTGCCTTATGATTAATGAGTATGGTGGGGAGAGAGGGAAGACAAGGTGCTTAGAAATTAGCAATGGAAAATGCATACTACATGGAGTTGAATTCTTAAGACAACAGGGTCTGAAAGATTCACAAAAATGGAGCAATTTGCCTGTAATGTTGAGTTTCATAGTGGGATACAGAGTGCTTAACTATTTTATTCTTTGGTTCAGATGCTACAGGACAAGAAAATAG 1533 0.4051 MDVNWFRRTSGYVTQDDALFPSLTVRETLMYSAMLRLPGGRKVAAVRVEELMKELGLDHIADSRIGGGTDHGISGGERRRVSIGVDLVHDPAVILIDEPTSGLDSASALNVVTLLRLVAFNQGKTIILTIHQPGFRILELFDGLILLADGFVMHNGSLNLLEARLKLAGHHIPDHVNVLEFALDVMESLVIHTSESGDNQFLPKDNQDHKMRMQHSKVVKVKAISYSNCPMEEIAILGQRFCCNIFRTKQLFVTRIIQAIVAGFVLGSIFFNVGNQQSHVALQTRSGFFAFSLTFLLSSTTEGLPIFLDERRTFMRETSGGAYRVCSYVLANALVFLPFLLLVGLLFSTPVYWLVGLRKDIDGFLYFSLVVWLVLLMSNSLVACFSALVPNFILGTSVIAGLMGSFFLFSGYFISEEKIPSYWIFMHYLSLFKYPFECLMINEYGGERGKTRCLEISNGKCILHGVEFLRQQGLKDSQKWSNLPVMLSFIVGYRVLNYFILWFRCYRTRK 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01836 510 ProSitePatterns ABC transporters family signature. 73 87 IPR017871 GO:0005524|GO:0016887
Vimu4g01836 510 Pfam ABC transporter 3 101 IPR003439 GO:0005524
Vimu4g01836 510 Gene3D - 1 175 IPR027417 -
Vimu4g01836 510 Pfam ABC-2 type transporter 131 206 IPR043926 GO:0140359
Vimu4g01836 510 Pfam ABC-2 type transporter 233 444 IPR013525 GO:0016020|GO:0140359
Vimu4g01836 510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 166 IPR027417 -
Vimu4g01836 510 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 6 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01836 Vimu-Chr4 20088874 20093944 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01836 1 161 Calmodulin-binding Proteins AT2G36910 27.485 3.98e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01836 K05681 - gmx:100776372 904.434