Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu4g01823 | ATGAAAAATGTTCCTTTTGTAGTTGGGGACCATGTGACGATGCGCCCTCCTGATACGAACAAGCCACCATACGTGGCTCGTGTTGAGAAAATTGAACCTTGTCGTAAGAACGATGTGAAGGTGCATGTTAGGTGGTACTATAGGCCTGAAGATTCCATTGGGGGACGTAGGAGATTCCATGGGGTGAAAGAGCTATTTTTGTCTGACCATTATGATGTTCAAAGTGCTCATGCCATTGAAGGGAAGTGTGTTGTGCACTCTTTCAAGAATTATACCAAGCTTCAGGATGTAGCTGCTGAGGATTATTATTATAGGTTTGAATACAAGGCTGCTACTGGAACTTTCACACCTGATCGTGTAGTTGTGTGA | 369 | 0.4363 | MKNVPFVVGDHVTMRPPDTNKPPYVARVEKIEPCRKNDVKVHVRWYYRPEDSIGGRRRFHGVKELFLSDHYDVQSAHAIEGKCVVHSFKNYTKLQDVAAEDYYYRFEYKAATGTFTPDRVVV | 122 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu4g01823 | 122 | PANTHER | OS08G0421900 PROTEIN | 8 | 122 | - | - | |
| Vimu4g01823 | 122 | ProSiteProfiles | BAH domain profile. | 4 | 119 | IPR001025 | GO:0003682 | |
| Vimu4g01823 | 122 | Gene3D | - | 1 | 121 | IPR043151 | - | |
| Vimu4g01823 | 122 | SMART | BAH_4 | 4 | 119 | IPR001025 | GO:0003682 | |
| Vimu4g01823 | 122 | Pfam | BAH domain | 6 | 118 | IPR001025 | GO:0003682 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vimu4g01823 | Vimu-Chr4 | 19858911 | 19859279 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vimu4g01823 | 13 | 115 | Core DNA Replication Machinery Family | AT4G14700 | 25.000 | 1.47e-06 | 43.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu4g01823 | K25868 | - | gmx:100800993 | 200.675 |