Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01817 ATGGTTATGGTGGTTTGGTTGTTTGTGGCACTTATCATAACACAGACATACACAGCTAACCTTGCCAGCATGCTAACTGCTGAACGGCTTGAACCAACTATAGATAATATTGATCAGCTACGGAATAGCAACATCAGGGTTGGATACAGTTCAGGATCCTTTCTGAAACATTATGTGGAGAACGTGTTGCAGTTCCACCCTGAAAACTTGAGGAACTATGGAGAACTTGAAGAGTATGCTGAAGCTTTCAGAAGAAAAGAAATAGGAGCTGCCTTTCTGGAAGCTCCTGCAGCAAAAGTTTTTCTAGCAAAGTACTGTAAAGAGTTTATTCAAGCCGGGCCTTTGTACAAAGTTGGAGGATTTGGATTTGTATGTCAGGCAACAATATTCTCATAG 396 0.4116 MVMVVWLFVALIITQTYTANLASMLTAERLEPTIDNIDQLRNSNIRVGYSSGSFLKHYVENVLQFHPENLRNYGELEEYAEAFRRKEIGAAFLEAPAAKVFLAKYCKEFIQAGPLYKVGGFGFVCQATIFS 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01817 131 SUPERFAMILY Periplasmic binding protein-like II 14 125 - -
Vimu4g01817 131 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 126 IPR015683 -
Vimu4g01817 131 Gene3D - 1 74 - -
Vimu4g01817 131 Pfam Ligand-gated ion channel 1 71 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01817 Vimu-Chr4 19804234 19804629 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01817 1 123 Ion Channels AT5G11210 43.307 5.08e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01817 - - vra:106760680 239.58