Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01815 ATGGGTAGCTTGCATATGCTTGTTCCTCTCCTTTGTTTGATGAGCACTGCATTTGGAAAAGCAAGTGTTGATGATGGCATGCATGCGAAGAAGAAGGGTACCATAGGACTTATTACAGACAACAATTCCCGTAACGGTAAAGAGGAGATAGTTGCTGTTAAGATGGCAATGGAAGATTTCTATCATTATAGCAATCAAAGTTTTGATTTACAGATAAGGGACTCACATGCTGATTCTCTTCAGGCTGCCCTAGCAGCTAGAGATCTTATTGATACACAAAAAGTGGAAGCAATTATAGGACCTGAAACATGGAAAGAGACAACTTCAGTGGCTGATATTTGTAGCCAAAATATGACCCCAGTTCTATCTCTAGCTGATGCAACACCAGACTGGTCAACTTTGAAGTGGCCCTATCTTGTGCAAATCTCACCTAATCAGTTTAAGCAGACGAAAGCAGTAGTAGCTATTGTACATTCCTTTGAATGGTACAACGTTAACATAATATACGATGATACTGATTCTTCATCCACGAGAATGTTCTCTCGTCTCTACAGTGATCTCAGTGTGTCAGGTGTTCATATAAGCAATGTTTTGGCCATTCCTTCATTAAGCTCCTCTTCACTGCCTCAAGAACTAGAGAAGCTTAGGAATGGCTTTTGCAGAGTTTTTGTTGTTAATTTGTCAGTTTCTTTGGCCATAAACCTGTTTCAAACTGCAAATGAATTAAAAATGATGGAGAAAGGTTATGTGTGGATCGTTACTGATCCTTTTACAAGTCTTGTCCATTCATTGAACTCTTCCACTATGTCCTCAATGCAAGGGATAGTTGGAGTAAAGAGCTACTTCCCAGAAATAGGGCTTCAATACGAGCACTTCTACTCTAAATTTCAAAAAAAGTTTAGCTCAGAGAACCCTCATGAGCTTAACAGTGAGCCTGGGATATTTGCAGCACGTGCATATGATGCTGCATGGACTCTAGCTCTATCCATGATCCAAACAACCAACAAAAAGGATCAAACGTTACTGGATAAGATTCTGCTCAATAATTTTACTGGCTTAAGTGGAAAAATTCAATTGACTGACCAAAAGTTAGATCCTTCAGATACTTTTCAGATCATCAATGTGATGGGGGAAGATTATAAGGAAATTGGGTTCTGGACAAATGGACTAGGTTTCTCAGATATTATAGGCCCAAATGCTACTTTCAATTCTTCAATGAAGGAACTTGGACAAGTTTTATGGCCAGGAAGACCGTGGGGAACTCCAAGAGGATGGATTCAAGCATTGAGTAAACCATTAAGAATTGGGGTCCCCGTTATTGACCCATTGAAACAATCCGTAACTGTAATTCAGGACCAAACAGACAATACCACCACTTTCCAAGGATTCACCATTGATATTTTCAGAGCAACTATGGATTTGCTGCCGTATCACTTGCCCTACAAATTGTATCCTTTCAATGACACATACGACAATTTGGTGAAGCAAGTCTATTTGAAGAATTTCGATGCAGTAATTGATGTGAGCATAATTTCATATCGATATCAGTATGCAGAATTCACTCAGCCATACACTGATCCAGGAGTGCTGATGGTAGTTCCCCTTAAATCAAAAGTGGATCATAGAGCTTGGTTATTTTTGAAACCTTTTACGAAGACTATGTGGGTTCTAATACTGGCCATGGTTATCTACAATGGCTTCATTCTTTGGATGTTGGAAAGACGCCACAGTCCTGAAATTACAGGTTCCATGCTGAATCAAACTGGGACCATGGCTTGGTTGGCATTGACCCCTCTAATCAAGTTAGATGGAGACAAGCTGCATAGCAATTTATCAAAGATGGTTATGGTGGTTTGGTTATTTGTGGCACTTATCATAACACAGACTTACACAGCTAACCTTGCCAGCATGCTAACTGCTGAACGGCTTGAACCAACTATAGATAATATTGATCAGCTACGGAATAGCAACATCAGGGTTGGATACAGTTCAGGATCCTTTCTGAAACATTATGTGGAGAAAGTGTTGCAGTTCCACCCTGAAAACATGAGGAACTACGGAGAACTTGAAGAGTTTGCTGAAGCTTTCAGAAGAAAAGAAATAGGAGTTGCCTTTCTGGAAATTCCTGCAGCCAAAATTTTCCTAGCAAAATACTGTAAAGAGTTTATTCAAGCCGGGCCTTTGTACAAAGTTGGAGGATTTGGATTTGCATTTCCAAGGGGCTCTCCATTGATTCCTGATGTAAACAAAGCACTTCTACATTTAGTAGAAACCGGCAAGGTAAGTGAATTAGAGAACAAAAGGCTTGCATCAGAGGAATGTGAAGACAGAGAAGTCAATGGAGAAACTGCAAGTCTTAGCCCGAATAGCTTCTGGGTCCTCTTCATATTGACAGGAGGCACATCAACATTTTCTATCTTGGTTTATGTTTTCCGTATGAATTATGCAAACAGTGAAGAGAAAACAATCTGGAGACTAACCACAATGATCATTCAGCAATGTAACCATGCAAAGAGAAGAATGTCAAGAAAAGTAAGTGATGTTGCAGAAAACCCTACGTCCTCTTCAACGACACATGCTACACCAACTCATGTTTAA 2598 0.3988 MGSLHMLVPLLCLMSTAFGKASVDDGMHAKKKGTIGLITDNNSRNGKEEIVAVKMAMEDFYHYSNQSFDLQIRDSHADSLQAALAARDLIDTQKVEAIIGPETWKETTSVADICSQNMTPVLSLADATPDWSTLKWPYLVQISPNQFKQTKAVVAIVHSFEWYNVNIIYDDTDSSSTRMFSRLYSDLSVSGVHISNVLAIPSLSSSSLPQELEKLRNGFCRVFVVNLSVSLAINLFQTANELKMMEKGYVWIVTDPFTSLVHSLNSSTMSSMQGIVGVKSYFPEIGLQYEHFYSKFQKKFSSENPHELNSEPGIFAARAYDAAWTLALSMIQTTNKKDQTLLDKILLNNFTGLSGKIQLTDQKLDPSDTFQIINVMGEDYKEIGFWTNGLGFSDIIGPNATFNSSMKELGQVLWPGRPWGTPRGWIQALSKPLRIGVPVIDPLKQSVTVIQDQTDNTTTFQGFTIDIFRATMDLLPYHLPYKLYPFNDTYDNLVKQVYLKNFDAVIDVSIISYRYQYAEFTQPYTDPGVLMVVPLKSKVDHRAWLFLKPFTKTMWVLILAMVIYNGFILWMLERRHSPEITGSMLNQTGTMAWLALTPLIKLDGDKLHSNLSKMVMVVWLFVALIITQTYTANLASMLTAERLEPTIDNIDQLRNSNIRVGYSSGSFLKHYVEKVLQFHPENMRNYGELEEFAEAFRRKEIGVAFLEIPAAKIFLAKYCKEFIQAGPLYKVGGFGFAFPRGSPLIPDVNKALLHLVETGKVSELENKRLASEECEDREVNGETASLSPNSFWVLFILTGGTSTFSILVYVFRMNYANSEEKTIWRLTTMIIQQCNHAKRRMSRKVSDVAENPTSSSTTHATPTHV 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01815 865 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 35 834 IPR015683 -
Vimu4g01815 865 FunFam Glutamate receptor 543 681 - -
Vimu4g01815 865 Gene3D - 430 542 - -
Vimu4g01815 865 PIRSF IGluLR_plant 3 864 IPR017103 -
Vimu4g01815 865 Gene3D - 543 687 - -
Vimu4g01815 865 FunFam Glutamate receptor 428 542 - -
Vimu4g01815 865 Pfam Ligand-gated ion channel 768 800 IPR001320 GO:0015276|GO:0016020
Vimu4g01815 865 FunFam Glutamate receptor 149 310 - -
Vimu4g01815 865 Gene3D - 41 368 - -
Vimu4g01815 865 SMART GluR_14 434 771 IPR001320 GO:0015276|GO:0016020
Vimu4g01815 865 SUPERFAMILY Periplasmic binding protein-like II 430 767 - -
Vimu4g01815 865 MobiDBLite consensus disorder prediction 842 865 - -
Vimu4g01815 865 CDD GluR_Plant 431 767 - -
Vimu4g01815 865 Gene3D - 716 776 - -
Vimu4g01815 865 Pfam Bacterial extracellular solute-binding proteins, family 3 455 767 IPR001638 -
Vimu4g01815 865 CDD PBP1_GABAb_receptor_plant 35 394 IPR044440 -
Vimu4g01815 865 Gene3D - 145 387 - -
Vimu4g01815 865 MobiDBLite consensus disorder prediction 847 865 - -
Vimu4g01815 865 Pfam Receptor family ligand binding region 52 375 IPR001828 -
Vimu4g01815 865 SUPERFAMILY Periplasmic binding protein-like I 34 425 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01815 Vimu-Chr4 19789173 19798598 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01815 4 863 Ion Channels AT2G29110 32.337 1.97e-138 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01815 - - vra:106760680 1407.51