Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01810 ATGAATGAATTGGAAGCAGAAATTGAAGTTCTGAGTAAATTGAGGCATAGGCACTTGATGACTTTGTTAGGACATTGTATTGAAGGCAACGAAAAGCTTTTGCAAAGGTTCATTAATAGAGACTTAAAACCCTCAAACATACTTTTGGGAGATGACACGAGAGCCAAGGTTGGAGATTTTGGTTTGGTTAAAATTATTGCACCACGAGGAAATGGTTATGTGTGGATACAAGTGGCAGGAACATTTGGATGTCTGGAATATGAATATGTAGCTACTGGAAGAGTGATGAGGAAAGTGAATGTGTATGCATTTGGAGTAGTTTTGATGGAACTAATTAGCGTTAGAAAGGCATTGGACAGTAGTTTGTCAGAAGAAATGCCTCACCTGGCTTCATGTGAAAGCATGGAGAACATATGTAAAGTGGCTGAGCTAACAGCTCGTTGCACTGCTCCTAAACTCCATAAAAGGCCTAATATGTGGCATGCAGTGAATGTCTTGGTTCCTCTGGTGGAGCAATGGAACCCCACCTGCACCCATGAACAACATGAAGAAGAAGGTTGTGACGTGATCTACGAGGGACATTATGATATGTCCTTCTCGGAAATTCTTTCCGACCGTTGA 621 0.4138 MNELEAEIEVLSKLRHRHLMTLLGHCIEGNEKLLQRFINRDLKPSNILLGDDTRAKVGDFGLVKIIAPRGNGYVWIQVAGTFGCLEYEYVATGRVMRKVNVYAFGVVLMELISVRKALDSSLSEEMPHLASCESMENICKVAELTARCTAPKLHKRPNMWHAVNVLVPLVEQWNPTCTHEQHEEEGCDVIYEGHYDMSFSEILSDR 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01810 206 Pfam Protein kinase domain 35 145 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01810 206 ProSiteProfiles Protein kinase domain profile. 1 170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01810 206 SMART tyrkin_6 1 166 IPR020635 GO:0004713|GO:0006468
Vimu4g01810 206 SUPERFAMILY Protein kinase-like (PK-like) 3 179 IPR011009 -
Vimu4g01810 206 Gene3D Transferase(Phosphotransferase) domain 1 34 191 - -
Vimu4g01810 206 Gene3D Phosphorylase Kinase; domain 1 1 33 - -
Vimu4g01810 206 PANTHER OSJNBA0070M12.3 PROTEIN 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01810 Vimu-Chr4 19731893 19732803 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01810 3 121 Trihelix Transcription Factor Family AT1G68690 35.366 8.30e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vimu4g01810 Pkinase 1.5e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01810 K00924 - mnt:21409512 200.29