Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01808 ATGTGTTTCTTACCGGTTTCATTCACTCTGCTTGGAATATCAGGATTAATTTGCATCCAGAGAAATCTCTACATTATGGATCAAACAACGGATTCAGAAATGGATCAACAGAGACGAGGCTATCATCATTCTGAACCCTGTATCCTTACTAGAGGAAACACAAACATCTCACAGCCGAATAATATGCATGCAATGGTGAGAGCTTCTGGGAACACAACTAATGTTGATTCTCACTTTGTGCCAGACGCTTATGACAATGCTAGGATGTATGGTGTTACACAATACAATGGCATTCAGCATCCCCATAATCTTGAAATGGGTGTGCCAGCGGCAGCCAACTTATATTATTCTGGCATTAATCCTTCTTCTGGTGCTGGTGTTTTCCCTCTGCCTCTAAATCACAGAGCTTCTGAGCAGTTGCCTGGTTCAAGTACATTTGCAGTTGCTGGGGTTTCTTCAGATAATTTTGGAAGAAGTTCTGGTTTCATGGATGATGTTAGAGGTCCCTACAAAAGGAAAATTGCTGAAGGGATGAGAGGAAATTACCAATATTTTAATGCATCATCTAGCTCTTCAATTGCTCCTCCTAATGCAAGACGCACTGCTGATGGTGTTGCTATGATGGATGCTGCACCATTTTCATTCCGTGTCCCTTCACTTGTGGAAGTAGGACCACATGGTAGTGCATGGAACAGGGCAGGTGAGTCTATCATGGTGCATGACCATAATCATTTGATTCATGGAAACTATTTAGGACAGCACTTTCAGCCAGCTGCTCCTCCGTGGTTGGACCAGCAGTTGAACGGTAACAATAATGATGGCCATACTGCACCCTGGAATCAGTCGCTTCCAATGCCTTATGTACAAGCACCTACTGTAAATGGAGGTTCATTAGATAGTGCAAGTATGGGTTTGCAGAGATATCATGATCCAGCTGGAAGCCGAAATGGCCTCAGGTTTCCTCACCCTCTTCCTGTCAATCAACAGCACCACAATTATCATCACCCAGCAATGCCTATGCAAGGAGTAAGAGGTCATAATATCAACTTTCACCCTGCAGTAACTGCAGCATCATTTAGAGTTCCAATAAATCCTTCACGCGGTGTTGCTATTCCACCGCAGCCTGGTTTTGAGCTAGGTCCTAGGCATGTTGGCCCTGCACCATCAGCCGGCTTCCGGATTTATCGACCTCATAGGGGGGTTGTGCCTGAGACAACTCTTGGACACCGAAGTCTTCCACCTGTGGGCTTCCTCCAAGTTGATGATGTTGCTTTAATTGATGAAGTGGGAAATTTAGTTGACCATCACAGAGATATGCGCTTGGACATCGAGGATATGTCTTATGAGGATCTCCTTGCATTGGGTGAGAGGATTGGCAATGTTAGCACCGGTTTATCAGAGGAAACAATCACAAATCAGTTGAAAACAAAATCCTATTCCTCAAGTGCTACTGGTATTAATCTGGAGGAGGAAGCTTGTGATGATCAGGAAACAGATTCTTGTATAATATGTCAGGAAGAATTCAAGAACCAGGAGAAGATTGGAGTTCTTCGATGTGAGCATGAATACCATGCGGATTGCTTAAGGAAATGGTTGGTTGTGAAAAATGTCTGCCCCATATGCAAATCAGAGGCTTTGACTCCTGGAAGGAAGGATGTATAG 1662 0.4398 MCFLPVSFTLLGISGLICIQRNLYIMDQTTDSEMDQQRRGYHHSEPCILTRGNTNISQPNNMHAMVRASGNTTNVDSHFVPDAYDNARMYGVTQYNGIQHPHNLEMGVPAAANLYYSGINPSSGAGVFPLPLNHRASEQLPGSSTFAVAGVSSDNFGRSSGFMDDVRGPYKRKIAEGMRGNYQYFNASSSSSIAPPNARRTADGVAMMDAAPFSFRVPSLVEVGPHGSAWNRAGESIMVHDHNHLIHGNYLGQHFQPAAPPWLDQQLNGNNNDGHTAPWNQSLPMPYVQAPTVNGGSLDSASMGLQRYHDPAGSRNGLRFPHPLPVNQQHHNYHHPAMPMQGVRGHNINFHPAVTAASFRVPINPSRGVAIPPQPGFELGPRHVGPAPSAGFRIYRPHRGVVPETTLGHRSLPPVGFLQVDDVALIDEVGNLVDHHRDMRLDIEDMSYEDLLALGERIGNVSTGLSEETITNQLKTKSYSSSATGINLEEEACDDQETDSCIICQEEFKNQEKIGVLRCEHEYHADCLRKWLVVKNVCPICKSEALTPGRKDV 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01808 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 461 546 IPR013083 -
Vimu4g01808 553 Pfam Ring finger domain 499 542 IPR001841 -
Vimu4g01808 553 MobiDBLite consensus disorder prediction 270 317 - -
Vimu4g01808 553 MobiDBLite consensus disorder prediction 270 301 - -
Vimu4g01808 553 ProSiteProfiles Zinc finger RING-type profile. 501 542 IPR001841 -
Vimu4g01808 553 FunFam E3 ubiquitin ligase BIG BROTHER 461 546 - -
Vimu4g01808 553 SUPERFAMILY RING/U-box 494 546 - -
Vimu4g01808 553 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 167 546 IPR045191 GO:0061630
Vimu4g01808 553 SMART ring_2 501 541 IPR001841 -
Vimu4g01808 553 CDD RING-H2_RNF24-like 499 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01808 Vimu-Chr4 19711326 19713668 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01808 418 546 C3H Transcription Factor Family AT2G15530 48.148 3.60e-36 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01808 K19041 - gmx:100800642 806.208