Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01806 ATGAAGAAACAGAAGCAAACTCAGTTGAATCCGAATTGGCTTCAACTACAACAAAAGCTGAATGACTCTAAGGCTTCAAGGTCCTTCAAAACTTTAGATAAAGTTACTCCAGAATCAATATTGGGGAAACGTAAAGAGAGACCAGACGAGGAATCCAATGATAGTCAGATTAATCCTCTTACTCCTGTAAATGATGATTCAAGTCTGACAGATGCAGTGGCCATGGATTGTGAAATGGTTGGCGTTGGTCAAGGAAACAAAAGTGCTCTTGGAAGAGTAACTCTGGTCAATAAGTGGGGAAATGTTATTTATGATGAGTTTGTTCGGCCAATGGAACGGGTTGTTGACTTCCGCACTAAAATCAGTGGCATAAGGCCTCGAGATCTTAGAAAAGCAAAGGATTTTTGGACTGCTCAGAAGAAAGTGTCAGAGTTGATCAATGGAAGGATCCTCGTTGGTCATGCCTTGTCCAATGACTTTAAGGCATTGTTATTAAGTCATCCCAAAAAGGATATACGAGATACCTCCGAGTATCAACCATTTCTAAGATCAAGTAGCAGAAGAGCACTACGACATCTTGCTGCCGAACATCTTGGCGTGCAGATCCAAACAGGAGAGCACTGCCCAATAGAAGATGCTCGTGCTGCTATGCTGCTTTACCAAAGACATAAGAAGGAGTGGGAAAAGAGCATAAAAGATCAATTTCGGTTCAAACAGAAGCAAAGGAAATCGAAGCAGATAAAGAAGCACAAGATTGAAGAAGCTTCAAATGAAAACCATGTTGAAATTGAATCATAG 798 0.4085 MKKQKQTQLNPNWLQLQQKLNDSKASRSFKTLDKVTPESILGKRKERPDEESNDSQINPLTPVNDDSSLTDAVAMDCEMVGVGQGNKSALGRVTLVNKWGNVIYDEFVRPMERVVDFRTKISGIRPRDLRKAKDFWTAQKKVSELINGRILVGHALSNDFKALLLSHPKKDIRDTSEYQPFLRSSSRRALRHLAAEHLGVQIQTGEHCPIEDARAAMLLYQRHKKEWEKSIKDQFRFKQKQRKSKQIKKHKIEEASNENHVEIES 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01806 265 Gene3D - 67 248 IPR036397 GO:0003676
Vimu4g01806 265 MobiDBLite consensus disorder prediction 26 53 - -
Vimu4g01806 265 Coils Coil 238 258 - -
Vimu4g01806 265 CDD REX4_like 73 221 IPR037431 GO:0006364|GO:0008408
Vimu4g01806 265 MobiDBLite consensus disorder prediction 54 68 - -
Vimu4g01806 265 MobiDBLite consensus disorder prediction 238 265 - -
Vimu4g01806 265 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 31 242 IPR047021 GO:0004527
Vimu4g01806 265 FunFam Interferon-stimulated exonuclease gene 20 68 239 - -
Vimu4g01806 265 SUPERFAMILY Ribonuclease H-like 72 228 IPR012337 -
Vimu4g01806 265 MobiDBLite consensus disorder prediction 20 68 - -
Vimu4g01806 265 SMART exoiiiendus 71 229 IPR013520 -
Vimu4g01806 265 Pfam Exonuclease 73 220 IPR013520 -
Vimu4g01806 265 MobiDBLite consensus disorder prediction 248 265 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01806 72 226 C2H2 Transcription Factor Family AT5G40310 37.427 2.05e-28 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01806 K18327 - gmx:100819122 434.106