Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01800 ATGCGATCATCGCCGTCTTCATTGGGTTCGTCGTCTCGATCGGGTTTGCGGCTTCGTAAGAAGCACAAGAGGTTGGATGCAATATGTGAGGAGGAGTACACTCGGAACCATGGTGAGTTTAATGATGATAATGATGGGTTGAATCCCGATGCAGGAGTTCGTCGGAGCTCCCGAGTTCGCCGTGCCCCGGTGCTGCTCGACGCATCTCCCGCTCCGCCGAAGAAGCGACGGAGGCTGCGGAAGGGTGGAATTGATCTTGGCGGGGAGAGTCCTATGAGTTCAGGGCGGGAAAATAGAGGTTCAGGTGGGGCTTGGAGTTCTAGGCTGAGATCAAGGGTTGGCAATGTAAGTTTTAGGGTAAAAGAGGAGGGGGAATCGCCACGTGGGAAAAGGAAGCTTTTTGAGGGTGTGGTGGGAAAGAAGGGTGATGATGAGGTTGTTAAGAAGGAGGAATTGGAAGCTTTGTTGCCGAAAGTGGTTAAGTCGAAAAGACCGGGAAGGATTAAAGCCACAAAGCACGATGAAGGGCATGAAGATGATGTGTCTAATGGGAGTTTGGAGGGGAGTAAGAGTCAGGAAGTGGTGCTTCTGTCGAGTAGTGACGAGGAGAGTGATTCTGAATCGGAAACTGAATTGTCGGGAGAGGATCAGATGTACGAATCAGATGGAAATTCCCCTTCTATGGTAGGAAATGAGGATGGGGATCATATGACTGATTCGGATGGGAGTGTCCCTCACATGGTAGAGAATGAGGAGAGGAACTTATCCAACGATTTGCAAATGAAGGAGTGTGGCGATGACATTGAATCGTCCTCTCAGGTGGAACGTGAAGAAAAAGTAGATTATCAGTCAGAGGGTGCGAAGGAAAGTGAAAGTGTTGGTAATGCAACTGAACAGGTAGACAATGAAGAATTCGTTGGTAAGGACGTTGATGATGGTGAAAATTTCTTGAAAGATGACAATGTTGATAAGGAGGATGATGTCAATGAAGATGTCTTGAAAGATAAAAGTGCTGGCAGGAACGATGAGTTGAAACATGCTTCAAATGACAAGCGTGGTCACCTGCGTATCAAAGAAGGCAGGCGGTGTGGTTTGTGTGGTGGAGGGAGCGATGGTAAGCCTCCAAAAAGGTTAGCTCATGATAATGGTGAAAGCGAGAATGAAGCTTATAGTGGATCGTCATCTTCAGAAGAGACTAACTATGATATTTGGGATGGTTTTGATGATGAACCTGGTTGGCTTGGTCGTCTCTTGGGTCCTATTAATGATTTCCATGGTATTACTAGGATATGGGTTCATCTACACTGTGCTGTATGGAGTCCAGAGGTTTATTTTGCCAACTTTGGATGCTTAAAAAATGTGAGGGCTGCACTTTTCCGAGGAAGGGCATTGAAGTGCACACGCTGTGGGAGGCGAGGGGCCACCACTGGTTGTCGTGTTGATCGTTGTCCAAGAACTTATCACTTGCCTTGTGCCAGAGCTAGTGGTTGTATCTTTGACCATCGTAAGTTTCTCATTGCCTGCACAGATCATCGGCATCTCTTCCAACCTCGTGGCAGTAAATATTTAGCCCGGATAAAGAAGTTGAAGGCTAGGAAAATGATGTGGGAGATAAGGAAACGATCAAATGAAGCTTGTAGAAAAGATATTGGAGATGAAGAGAGATGGTTGGAAAATTGTGGAGAGGATGAAGAATTTTTGAAACGTGAGAACAAGAGGCTTCAACGTGATTTATTGAGAATAGCCCCAGTGTACATTGGGGGTTCAGACTCTGCCTGTGGAAATTCATTTCAGGGTTGGGAATCTGTTGCTGGGCTCAGAGATGTCATCCGTTGTATGAAAGAAGTTGTCATTTTACCTCTGTTATATCCTGAGCTATTTGATAATTTAGGGCTTACACCACCAAGAGGTGTTCTTTTGCATGGGCATCCTGGAACGGGGAAAACCTTAGTTGTCCGTGCATTGATAGGTGCATGTGCCCGTGGTGATAAACGAATTGCATATTTTGCCCGGAAAGGTGCAGATTGCTTGGGAAAATATGTTGGTGATGCCGAGCGTCAACTAAGACTATTGTTTCAGGTTGCTGAGAAATGTCAACCTTCTATAATATTCTTTGATGAAATAGATGGTCTAGCACCCCTTCGCACTAGGCAGCAAGACCAGACACATAGTTCTGTTGTGTCAACATTGCTTGCTCTTATGGATGGTCTGAAGTCTAGGGGTTCAGTTGTGGTCATAGGTGCAACAAACCGTCCTGAATCCGTTGACCCAGCACTTAGGCGCCCTGGTAGGTTTGATCGGGAAATTTATTTCCCATTACCATCAATTGAGGACAGAGCTTCCATTCTCTCACTTCACACTCAAAAGTGGCCAAAACCAATTACCGGATCCTTGCTTGAGTGGATTGCAAGAAAAACACCAGGCTTTGCAGGTGCCGATCTCCAGGCTCTTTGTACCCAAGCAGCTATTAATGCGTTGAAGAGGAATTTTCCATTGCAAGAAGTCTTGTCTTTAGCTGCCCAAGAAAAACATTCTGGTTCTAAGCCAATTCCTCTTCCATCCTTTGCAGTGGAGGAGAGGGACTGGTTAGAGGCTGTTTTTTCTTCCCCACTACCCTGCTCTCGAAGAGATGCTGGAAATGCTGCCAATGATGTAGTATGCTCCCCTCTTCCAATCCAGCTTACTCCTTGTTTATTGCAGCCATTGTGCACTCTTCTTGTATCTCTACATCTTGATGAACGTCTATGGTTACCACTTCCCATATTGAAAGCTGTAACTGTGATAAAGGATGCTACGATTTCTGCTCTGGACAAAAAGCAAAAGCCTTTTGATCACTGGTGGTTGCATATGGATGAATTTCTTCACGAATACAACACTGTTCATGAGTTAAAGAGACATCTTACTTGTTCTGGTATTTTATCTGAGGTTGATGGCATTATTGGTTCTAATGATACAGAGGGTGATACTAATGATAGCAACTTGAGGCTAGAATCCCCTTCAAGGAACCATCTTGGTATGCGTAGTGGTTTATTTGCATTGACCAACAAATCAGGATTCCGGATACTAATTTCTGGAGATCCTCGATCTGGCCAGAGACATCTTGCTTCTTGTCTTCTTCACTGCTTTATTGGAAATATTGAAATACAGAGGATTGATATGGCAACTATTTTACAAGAAGGCCATGGAGAAGTGGTGCAGGGGATTGCACAAATATTAATGAAATGTGCTAGCAGGCAATCTTGCGTAGTATTCTTGCCAAAAATTGATTTATGGGCTCTGGAAAAACATTTTCAAATCTCTGAAAGGACTGATTCGTGTTTAAAGAGAGGCAAGTCCTACTTCACACGAAACCAAGTTGTTGTGAAGGAAAGAGAGATCAATAATGAGAAAAGCTCAACTGAGATGGCCAATGGCCAAGCCATCACAAAGGCTTCATTTGCTTGGATGTCATTTGTTGAGCAGGTGGAATCCATTGGTGTATCCACATCCTTGATGATTCTGGCTACTTCGGAAGTTCCCTATAAAGAACTTCCTTGCAAAGTAAGAGAATTCTTCAAGAGTTATCAATCTAGAGACAGCCAGTCAACTCCATTGGAGCATACAGTTCCTCGTTTCTCTGTGCAGATTGATGGGAATTTTGACCATGACATGGTGCTCAATTTATCTGCACTTGAGTTATTGAGAAATGTAGTTAAGCAGCTGGTTCAATTGATTCATCAGAGATCTCATGCTCATACGGGTAGCCAAAAGGGCCGCAGAACCTATGAATCAATTGAAATTTGTAAAGAAAAGGTATGTCAAAGAAACGATGGATCAGATAAAAAGAGTGAAATCCAACACGAGTCCTTTACAAAAGTTTCACCAACACCAACCAGCAAGTCACTGAAGGGAAAGTCAACCCTGTTGTCGGCAATATCTACACTTGGTTATCAAATTCTCTTATACCCTCACTTTGCTGAACTTTGTTGGGTCACTTCCAAACTCAAAGAAGGTCCTTATGCTGATGTAAGTGGACCTTGGAGGGGCTGGCCTTTCAATTCTTGTATAATTCGTCCTAATAATTCACACGACAAGGTTGTAGTTTCTTGTAATTCTGGTAGCATTAAAAGCAGAGAAGCATCTGGTCTAGTCAGAGGCTTGATTGCTGTTGGTTTATCAGCTTACAGAGGTGTTTATAGATCAGTTAGGGAAGTTTCCCTGGATGTAAGGAAGGTTCTTGAGGTCTTAATTGAGAAAATCAATACCAAAATTCAAGCTGGGAAAGATAGATATCAATATTTTCGTATTTTATCTCAGGTGGCTTATTTAGAAGATATGGTCAACAATTGGGCTTACTCATTGCTAAGTCTGGAGCAGGATTCCCATGAGCATACAACAAAGGTTACACCAGCAAGTGGTGGGTTATTTAACAGTCATCACATTAGTGAAAATCGCCAAACAGAAGGCGAGGGCAGCCATGTTTCTGTTGCTGGAGATGGTCATGATTTGAAGACATTGGAGGAAAGTCATAACGGAATTCCTGCTGAAATGGCGGGGTGTATTGCCTCTAACCAAAATGGTAATTTAGATATTGATTGTGATGATGGAAATGCTAGTTCTGAAGGATCTCTACAGAACCATTATTTTTCTGAAAAGCATATCAACAACTCTGCTGATGCTGTTATGGTTGCAAACCAACCTCTTCAACCGGCTACAAGTCAGCAGAATGGAACACTATTAGTACAACATGAATCTCTAACGGCTAGAAATAATGAAAAGGTGCATGAAAAACTAGGGATTTCAAATAACTTCAGCAAATCCATGGGCACTCAAACTGTGGTTCTTTCTGCAAATGGAGTTCACACTGCTTTGGAACCAGAGAAACAGAATATTGAGATTGGTAACCGTCCTGTCTCTGATCGGCCTCTTATTGTGTCCTCATCCTCGCAAGACACTGGTGCAACATTAAGTGATGTCAAATCTGACAAACATGAGAATGCTACAGACAATGATGTCTCTTCAAGTAATGGTAGTGTTCCTGCTGAATCGGGGGTTATATGCTTGTATCAATGTTGCCCTGCATGTCTCCACGGTCTCTATCATTTGACAAAGAAAATGCTTCTTAGAGAGTGGGGGATGAACGGTGACCAGTGGAGTGTAGAAGATGTACATGATGCTGTTGCAACATTATCTGTGGATCTTATTTCAGCAGTTAGAAAAAGCTTTGTGGCTGAAGATTTCATTGCTTCATCAAATAAAACCTCAAGGCATGAAACATCTCTTGATTTAGTGCCTGTCGAATGTATTTCTCACTCTGCAAGCGAACATGCAACTGCAACTGAAGATGGGGCACTGAATGATCTTAAATTTGTTTTCAGAGATGGTGTACTAGTTCATATGGACCCTGACAAGGATATCTCACTTCACTGTAAATTTCAGAACTTATGCCTTTGTTCTCTTAGAGAGTTGATAATAATGACAAAGCGACCTTTTGATTAG 5478 0.4303 MRSSPSSLGSSSRSGLRLRKKHKRLDAICEEEYTRNHGEFNDDNDGLNPDAGVRRSSRVRRAPVLLDASPAPPKKRRRLRKGGIDLGGESPMSSGRENRGSGGAWSSRLRSRVGNVSFRVKEEGESPRGKRKLFEGVVGKKGDDEVVKKEELEALLPKVVKSKRPGRIKATKHDEGHEDDVSNGSLEGSKSQEVVLLSSSDEESDSESETELSGEDQMYESDGNSPSMVGNEDGDHMTDSDGSVPHMVENEERNLSNDLQMKECGDDIESSSQVEREEKVDYQSEGAKESESVGNATEQVDNEEFVGKDVDDGENFLKDDNVDKEDDVNEDVLKDKSAGRNDELKHASNDKRGHLRIKEGRRCGLCGGGSDGKPPKRLAHDNGESENEAYSGSSSSEETNYDIWDGFDDEPGWLGRLLGPINDFHGITRIWVHLHCAVWSPEVYFANFGCLKNVRAALFRGRALKCTRCGRRGATTGCRVDRCPRTYHLPCARASGCIFDHRKFLIACTDHRHLFQPRGSKYLARIKKLKARKMMWEIRKRSNEACRKDIGDEERWLENCGEDEEFLKRENKRLQRDLLRIAPVYIGGSDSACGNSFQGWESVAGLRDVIRCMKEVVILPLLYPELFDNLGLTPPRGVLLHGHPGTGKTLVVRALIGACARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPLRTRQQDQTHSSVVSTLLALMDGLKSRGSVVVIGATNRPESVDPALRRPGRFDREIYFPLPSIEDRASILSLHTQKWPKPITGSLLEWIARKTPGFAGADLQALCTQAAINALKRNFPLQEVLSLAAQEKHSGSKPIPLPSFAVEERDWLEAVFSSPLPCSRRDAGNAANDVVCSPLPIQLTPCLLQPLCTLLVSLHLDERLWLPLPILKAVTVIKDATISALDKKQKPFDHWWLHMDEFLHEYNTVHELKRHLTCSGILSEVDGIIGSNDTEGDTNDSNLRLESPSRNHLGMRSGLFALTNKSGFRILISGDPRSGQRHLASCLLHCFIGNIEIQRIDMATILQEGHGEVVQGIAQILMKCASRQSCVVFLPKIDLWALEKHFQISERTDSCLKRGKSYFTRNQVVVKEREINNEKSSTEMANGQAITKASFAWMSFVEQVESIGVSTSLMILATSEVPYKELPCKVREFFKSYQSRDSQSTPLEHTVPRFSVQIDGNFDHDMVLNLSALELLRNVVKQLVQLIHQRSHAHTGSQKGRRTYESIEICKEKVCQRNDGSDKKSEIQHESFTKVSPTPTSKSLKGKSTLLSAISTLGYQILLYPHFAELCWVTSKLKEGPYADVSGPWRGWPFNSCIIRPNNSHDKVVVSCNSGSIKSREASGLVRGLIAVGLSAYRGVYRSVREVSLDVRKVLEVLIEKINTKIQAGKDRYQYFRILSQVAYLEDMVNNWAYSLLSLEQDSHEHTTKVTPASGGLFNSHHISENRQTEGEGSHVSVAGDGHDLKTLEESHNGIPAEMAGCIASNQNGNLDIDCDDGNASSEGSLQNHYFSEKHINNSADAVMVANQPLQPATSQQNGTLLVQHESLTARNNEKVHEKLGISNNFSKSMGTQTVVLSANGVHTALEPEKQNIEIGNRPVSDRPLIVSSSSQDTGATLSDVKSDKHENATDNDVSSSNGSVPAESGVICLYQCCPACLHGLYHLTKKMLLREWGMNGDQWSVEDVHDAVATLSVDLISAVRKSFVAEDFIASSNKTSRHETSLDLVPVECISHSASEHATATEDGALNDLKFVFRDGVLVHMDPDKDISLHCKFQNLCLCSLRELIIMTKRPFD 1825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01800 1825 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 412 514 IPR013083 -
Vimu4g01800 1825 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 600 831 IPR027417 -
Vimu4g01800 1825 MobiDBLite consensus disorder prediction 185 199 - -
Vimu4g01800 1825 MobiDBLite consensus disorder prediction 1622 1671 - -
Vimu4g01800 1825 MobiDBLite consensus disorder prediction 366 398 - -
Vimu4g01800 1825 MobiDBLite consensus disorder prediction 94 113 - -
Vimu4g01800 1825 ProSitePatterns AAA-protein family signature. 743 761 IPR003960 GO:0005524|GO:0016887
Vimu4g01800 1825 MobiDBLite consensus disorder prediction 302 351 - -
Vimu4g01800 1825 MobiDBLite consensus disorder prediction 23 44 - -
Vimu4g01800 1825 MobiDBLite consensus disorder prediction 1282 1296 - -
Vimu4g01800 1825 MobiDBLite consensus disorder prediction 1634 1649 - -
Vimu4g01800 1825 MobiDBLite consensus disorder prediction 1271 1296 - -
Vimu4g01800 1825 Pfam AAA+ lid domain 799 831 IPR041569 -
Vimu4g01800 1825 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 774 867 - -
Vimu4g01800 1825 Pfam ATPase family associated with various cellular activities (AAA) 638 773 IPR003959 GO:0005524|GO:0016887
Vimu4g01800 1825 FunFam ATPase family, AAA domain-containing 2 597 780 - -
Vimu4g01800 1825 Coils Coil 557 577 - -
Vimu4g01800 1825 SMART AAA_5 634 775 IPR003593 GO:0016887
Vimu4g01800 1825 MobiDBLite consensus disorder prediction 1 351 - -
Vimu4g01800 1825 MobiDBLite consensus disorder prediction 200 216 - -
Vimu4g01800 1825 MobiDBLite consensus disorder prediction 168 184 - -
Vimu4g01800 1825 MobiDBLite consensus disorder prediction 234 286 - -
Vimu4g01800 1825 MobiDBLite consensus disorder prediction 115 160 - -
Vimu4g01800 1825 Pfam PHD-like zinc-binding domain 433 512 - -
Vimu4g01800 1825 Gene3D - 774 844 - -
Vimu4g01800 1825 ProSiteProfiles Extended PHD (ePHD) domain profile. 400 512 IPR034732 -
Vimu4g01800 1825 PANTHER AAA DOMAIN-CONTAINING 13 1746 IPR045199 -
Vimu4g01800 1825 FunFam P-loop containing nucleoside triphosphate hydrolases superfamily protein 358 514 - -
Vimu4g01800 1825 Gene3D - 600 773 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01800 Vimu-Chr4 19623853 19630776 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01800 600 835 Calmodulin-binding Proteins AT3G56690 40.756 2.92e-45 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01800 - - gmx:100803849 2746.84