Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01777 ATGCAGCAAGATCAGCTGAAGAAGGTTCTTTCTTTCTCCACTGTTGCCCCTTTTGTTTGCAGAGTTTGTTGTGATGTGAAGATGGGGTTTTTCTCCTTTGTGGTTGGTGGATCTTGCATGGTTTTAGTTTGGAGTGTGCAGATTTGGATGAGCATCACTGTTGAATTGGCTCGATTCTGCCGAATTTTGTTGATTAATGGTGGTTATACGGATGAGTTTGTTAATCCGGATATCAAAGAGTTAGAGTTTTTCACTGAGTATGGGGATGCCAACCGATACAAGATTCTTGAAGTTGTTGGGAAGGGTAGCTATGGAGTTGTTTGTTCAGCAATTGATACACACACTGGGGGAAAGGTTGCAATAAAGAAGATTCATGATATTTTTGAACATATCTCTGATGCCATTAGAATCCTCAGGGAAGTCAAGTTGCTTAGACTTTTAAGACACCCTGATATTGTTGATATTAAGAGGATCATGTTACCGCCTTCAAAGAGGGAGTTTAAAGATATTTATGTTGTCTTTGAGCTCATGGAGTCTGATCTCCATCAGGTCATCAAAGCTAATGACGACTTGACCCGTGAGCACCATCAGTTTTTTCTTTATCAGATGCTACGTGCGTTGAAGTATATGCATACAGCTAATGTATATCACAGAGACCTTAAACCCAAGAATATCCTGGCAAATGCAAACTGCAAACTGAAAGTTTGTGATTTTGGTTTGGCTAGGGTTGCGTTTAATGATGCCCCAACAACAACATTTTGGACGGATTATGTTGCCACAAGATGGTATAGAGCCCCAGAACTATGTGGTTCCTTCTTTTCTAAGGTATATAATTTGGCCAAAATTTATCTAATATAG 858 0.3963 MQQDQLKKVLSFSTVAPFVCRVCCDVKMGFFSFVVGGSCMVLVWSVQIWMSITVELARFCRILLINGGYTDEFVNPDIKELEFFTEYGDANRYKILEVVGKGSYGVVCSAIDTHTGGKVAIKKIHDIFEHISDAIRILREVKLLRLLRHPDIVDIKRIMLPPSKREFKDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKYMHTANVYHRDLKPKNILANANCKLKVCDFGLARVAFNDAPTTTFWTDYVATRWYRAPELCGSFFSKVYNLAKIYLI 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01777 285 Gene3D Transferase(Phosphotransferase) domain 1 177 272 - -
Vimu4g01777 285 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 92 272 - -
Vimu4g01777 285 ProSitePatterns MAP kinase signature. 128 231 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vimu4g01777 285 ProSitePatterns Protein kinases ATP-binding region signature. 99 123 IPR017441 GO:0005524
Vimu4g01777 285 SMART serkin_6 93 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01777 285 Pfam Protein kinase domain 93 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01777 285 FunFam Mitogen-activated protein kinase 177 282 - -
Vimu4g01777 285 Gene3D Phosphorylase Kinase; domain 1 91 176 - -
Vimu4g01777 285 FunFam Mitogen-activated protein kinase 83 187 - -
Vimu4g01777 285 ProSiteProfiles Protein kinase domain profile. 93 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01777 285 SUPERFAMILY Protein kinase-like (PK-like) 88 271 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01777 Vimu-Chr4 19371270 19376713 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01777 79 275 MAP Kinase Gene Family AT1G53510 93.401 2.30e-138 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vimu4g01777 Pkinase 5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01777 - - gmx:100800878 403.675