Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01773 ATGATGTCGCTTGGTAGACTACTCCCGCTACCACTGAAGAAACTTCCAGAGCTTCGAAACGACACCGTTTGCAACGAGACAGAAGCAAACAATTCTATCCATCTAGTCCTTAAGCAATCTCTTAACGTCGTGCGACCTCGTCAACCAGACTCTCCTCGTTGTAGGCATTCTTTCACCTATAAATCCCTTCCACATCGCTTCCTCTTCTCACAAATTCCAAAACTCTGCAACAACAACGTCAAGAACAAGATGGAAGAGGAAGCCACGGATTCTCGAAAGCAAGCGAGACTCGCAATCATGGAACTGGCTAACATGATAAGCGTTCCGATGGCCCTAAACGCCGTCGTACGCCTCAACGTCGCCGACGCCATCTGGAACTCCGGCGCCAACATCCCCATCTCTGCCGCCCAGATCCTCCCCCGCATCCTCCCCGCCGGCGACGCCGAGAACCTCCAGCGACTCCTCCGCATCCTCACCAGCTACGGCGTCTTCAAGGAGCACGTCGACGCCGGCGAACGCAAGTACTCCCTCACCGACGTCGGCAAAACGCTTGTCACTGACGAGCAAGGTCTCTCCTACGGTGCTTACGTGCTTCAACACCACCAGGACGCGTTGATGCGAGCGTGGACATTGGTTCACGAGGCAGTGGTGGACCCTACGAAGGAGCCGTTCGAGAGGGCGAACGGAGAGGGAGCGTATGGGTATTATCTGAAGCAGGAAGAGATGAACGAGTTGATGGTGAAAGCCATGTCAGGGGTGTCAGTGCCCTTCATGAGGGCCATGTTAGAGGGCTACGATGGCTTCCAAGGTGTGGAGAAGCTCGTGGATGTGGGTGGTAGTGGCGGTGACTGCCTCCGTATGATCCTGCAGAAACACCCAACCATCAAGGAGGGGATCAACTTCGACCTCCCTGAAGTTGTGGCCAAAGCACCACCAACCCCATATGTAACCCATGTGGGTGGTGACATGTTCAAATCTATTCCTCAAGGAGACGCTATCTTCATGAAGTGGGTGCTAACAACATGGACGGACGAGGAAATAAAGGAGATAATGCGGAACTGTCACAAGGCACTTCCTGAGGGAGGGAAAGTGATAGCTTGTGAGCCAGTGCTGCCAGAGCACTCAGATGAGAGTAACAGAACAAGGGCGTTGCTTGAGGGTGACATTTTTGTGATGACAATCTACAGAGCGAAGGGGAAGCACAGGACTGAAGAACAGTTCAGGCAGTTAGCCATTGATGCAGGTTTCCCTCGTTTCAGAGCCATCAATGTTGACCATTTTTACACTGTTCTTGAGTTTCAGAAATGA 1308 0.526 MMSLGRLLPLPLKKLPELRNDTVCNETEANNSIHLVLKQSLNVVRPRQPDSPRCRHSFTYKSLPHRFLFSQIPKLCNNNVKNKMEEEATDSRKQARLAIMELANMISVPMALNAVVRLNVADAIWNSGANIPISAAQILPRILPAGDAENLQRLLRILTSYGVFKEHVDAGERKYSLTDVGKTLVTDEQGLSYGAYVLQHHQDALMRAWTLVHEAVVDPTKEPFERANGEGAYGYYLKQEEMNELMVKAMSGVSVPFMRAMLEGYDGFQGVEKLVDVGGSGGDCLRMILQKHPTIKEGINFDLPEVVAKAPPTPYVTHVGGDMFKSIPQGDAIFMKWVLTTWTDEEIKEIMRNCHKALPEGGKVIACEPVLPEHSDESNRTRALLEGDIFVMTIYRAKGKHRTEEQFRQLAIDAGFPRFRAINVDHFYTVLEFQK 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01773 435 Gene3D Vaccinia Virus protein VP39 189 435 IPR029063 -
Vimu4g01773 435 PANTHER O-METHYLTRANSFERASE 100 423 IPR016461 GO:0008168
Vimu4g01773 435 Pfam O-methyltransferase domain 209 416 IPR001077 GO:0008171
Vimu4g01773 435 Gene3D - 80 188 IPR036388 -
Vimu4g01773 435 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 191 433 IPR029063 -
Vimu4g01773 435 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 100 435 IPR016461 GO:0008168
Vimu4g01773 435 FunFam Caffeic acid 3-O-methyltransferase 190 435 - -
Vimu4g01773 435 SUPERFAMILY "Winged helix" DNA-binding domain 91 187 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01773 Vimu-Chr4 19315382 19318816 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01773 84 435 Monolignol Biosynthesis Gene Families AT3G53140 73.816 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01773 - - gmx:100784957 633.639