Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01770 ATGGAAGAGGAAGGCACGGATTCTCGAAAGCAAGCGAGACTCGCCATCATCGAACTGGCCAACATGACAAGCGTTCCGATGGCCCTAACGGCCGTCGTTCGCCTCAATGTCGCCGACGCGATCTGGAACTCCGGCGCCAATATCCCCATTTCCGCTGCCCAGATCCTCCCCCGCATCCTCCCCGCGGGCGACGCCGAGAACCTCCAGCGACTCCTCCGCATCCTCACCAGCTACGGCGTCTTCCAGGAGCACATGAACGCCGGCGAACGCAAGTACTCCCTCACCGACGTCGGCAAAACGCTTGTCACTGATGAGCAAGGCCTCTCCTACGGTGCTTACGTGCTTCAACACCACCAGGTCCGATTTTTTAAGAAATTTTTTTCTGATTAA 390 0.5744 MEEEGTDSRKQARLAIIELANMTSVPMALTAVVRLNVADAIWNSGANIPISAAQILPRILPAGDAENLQRLLRILTSYGVFQEHMNAGERKYSLTDVGKTLVTDEQGLSYGAYVLQHHQVRFFKKFFSD 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01770 129 Gene3D - 1 110 IPR036388 -
Vimu4g01770 129 PANTHER O-METHYLTRANSFERASE 19 114 IPR016461 GO:0008168
Vimu4g01770 129 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 17 129 IPR016461 GO:0008168
Vimu4g01770 129 SUPERFAMILY "Winged helix" DNA-binding domain 8 104 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01770 Vimu-Chr4 19304232 19304621 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01770 1 119 Monolignol Biosynthesis Gene Families AT3G53140 70.635 1.49e-55 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01770 - - gmx:100784957 192.2