Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01762 ATGAGGAAGGCCTTGATTATAGCCTTTTCCATAACCATATGCTTCATCGCTTTTGTGATATCCAAGATTGTTATCTCAGTTCTCCTCTACAAAAGATGGAGAAGAAAACAGATTATCCATGAAGAATGTTATACAGGTATGAGGAAAAAGGGGATGTCCTCAGTGCTTAAATCTCTCACAGCTGATGCGATCTTAAAAAAGACACAGAAACTGAACAACAAGGACATCATTGGGTCAGGTGGTTATGGTGTGGTTTATGGAATAAAACTAGATGAATCCACAGCCTTGGCAGTAAAAAGACTAAACCGTGGAACTGCAGAAAGAGATAAAGGCTTTGAGAGAGAGTTGCAAGCAATGGCAGACATAAAACACCGCAACATTGTGACCCTTCATGGATATTACACTGCACAACACTACAATCTTCTCATATATGAGCTAATGCCCAATGGAAGTTTGGACTCCTTTTTGCATGGAAGTTCAAGGGACAAGAAGGTTTTGGATTGGGCAACCAGATATAGAATAGCTGCAGGTGCAGCTAGAGGAATATCATATCTTCATCATGATTGCATCCCTCACATTATCCACAGAGACATCAAGTCAAGTAACATATTGTTGGATGAAAATATGGATGCTCGAGTTTCTGATTTTGGATTAGCCACTTTGATGCAACCAAATAAAACTCATGTCTCAACATTTGTGGCTGGAACTTTTGGATACTTGGCACCTGAATATTTTGATACAGGAAGAGCAACACTCAAAGGGGATGTTTACAGCTTTGGAGTTGTTTTACTGGAGCTTTTAACTGGGAAGAAACCCAGTGATGAAGCATTTATGGAAGAGGGAACAATGCTTGTCACATGGGTGAAGGCTGTTGTTCGAGAGAAGAAGGAGGAGTTCGTCCTTGATAGTAGCTTAGGAACTTGTTCAATGGAAGAGGTAAATAAGGTGTTCAGCATTGCAATGATGTGTCTTGAACCAGATCCTTTGAATAGGCCAACCATGGGTGATGTTAATCCTGATTTTGATATTAAAACCATCACTCTGAACTGTGGTGTTTCTGGAAAATCATCTTACAAGCGGTGGTGGAGCTTGGGAGTGCCATGCTCAACAGAGAGAGGGAATGGAGGAACATAA 1134 0.4074 MRKALIIAFSITICFIAFVISKIVISVLLYKRWRRKQIIHEECYTGMRKKGMSSVLKSLTADAILKKTQKLNNKDIIGSGGYGVVYGIKLDESTALAVKRLNRGTAERDKGFERELQAMADIKHRNIVTLHGYYTAQHYNLLIYELMPNGSLDSFLHGSSRDKKVLDWATRYRIAAGAARGISYLHHDCIPHIIHRDIKSSNILLDENMDARVSDFGLATLMQPNKTHVSTFVAGTFGYLAPEYFDTGRATLKGDVYSFGVVLLELLTGKKPSDEAFMEEGTMLVTWVKAVVREKKEEFVLDSSLGTCSMEEVNKVFSIAMMCLEPDPLNRPTMGDVNPDFDIKTITLNCGVSGKSSYKRWWSLGVPCSTERGNGGT 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01762 377 Gene3D Phosphorylase Kinase; domain 1 34 146 - -
Vimu4g01762 377 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 9 338 - -
Vimu4g01762 377 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 147 349 - -
Vimu4g01762 377 FunFam Receptor-like serine/threonine-protein kinase 47 146 - -
Vimu4g01762 377 ProSiteProfiles Protein kinase domain profile. 71 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01762 377 SMART serkin_6 71 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01762 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 193 205 IPR008271 GO:0004672|GO:0006468
Vimu4g01762 377 Gene3D Transferase(Phosphotransferase) domain 1 147 346 - -
Vimu4g01762 377 Pfam Protein kinase domain 73 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01762 377 ProSitePatterns Protein kinases ATP-binding region signature. 77 99 IPR017441 GO:0005524
Vimu4g01762 377 SUPERFAMILY Protein kinase-like (PK-like) 55 337 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01762 Vimu-Chr4 19212928 19215190 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01762 64 334 Receptor kinase-like Gene Family AT2G35620 49.077 5.59e-89 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Vimu4g01762 Pkinase 8.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01762 - - ahf:112703495 537.339