Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01750 ATGGTTCAACCAGGTGACCATTGGAAGCTCCTTATACTTCATTTGGCTATGACTTGCTTTCCTTTATTTTTCAGTAAGTCATCTTCTTCAGCAAGAAAAGATCCAGAAATTGATGAAGGCATTCATAATGTTAAACTCTACTCCTACAAAGAATTAAGAAATGCCACTGATGACTTCAGTCAAGCCAATAAAATCGGAGAGGGTGGTTTTGGTTCTGTCTACAAGGGACGACTTAAAGATGGAAAAGTTGCTGCAATAAAAGTTCTTGCAGCAGAATCAAGACAAGGAGTGAAGGAGTTCTTGACAGAGATTAATGTAATCTCAGAGATAGAGCATGAAAATTTGGTCAAGTTATATGGATGTAAAATAAGTATTGGTATTGCTCGTGGACTGGCCTATCTTCATGAAGAAGTAAGGCCTCATATCGTTCACAGGGATATAAAAGCAAGCAACATCCTCCTTGATAAAGATCTTACACCCAAAATTTCAGATTTTGGTCTTGCAAAGCTTATTCCAGCAAACATGACTCATGTTAGCACCCGAGTAGCAGGAACAATAGGTTATTTGGCACCCGAGTATGCAATAGGGGGGAAGCTAACAAGGAAAGCAGATGTTTACAGCTTTGGTGTCCTCCTTGTGGAGATAGTCAGTGGAAGATCTAACACGAACACGCGATTACCATTAGAAGAACAATTTCTTCTAGAGAGGCTACTGATCTTACAGACTTGGGAACTTTATGAGAGAAAGGAATTGGTGGGACTGGTAGATACATCACTGGACGGGGAATTCGATGCCGAGCAGGCTTGTAAGTTTATGAAAATTGGCCTTCTTTGCACTCAGGAATCGCCAAAGCTCCGGCCATCCATGTCTTCTGTGGTGAAGATGCTCACTGGAAAAATAGATGTTGATGACAGTAAGATAACAAAACCTGCCTTAATTTCTGATTTCATGGACCTCAAAGTTAGAAGGAACGAAGAAAGTAGTAGTTATGTGAAGAATTCATCTACCTACGATACATACTCTTCTTCAGACAACCATGACACTACCATGTCTTCTGCCACAACTACAACTTTTGCTGCAGTATATGATGAAAGCATGTGA 1101 0.4024 MVQPGDHWKLLILHLAMTCFPLFFSKSSSSARKDPEIDEGIHNVKLYSYKELRNATDDFSQANKIGEGGFGSVYKGRLKDGKVAAIKVLAAESRQGVKEFLTEINVISEIEHENLVKLYGCKISIGIARGLAYLHEEVRPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPANMTHVSTRVAGTIGYLAPEYAIGGKLTRKADVYSFGVLLVEIVSGRSNTNTRLPLEEQFLLERLLILQTWELYERKELVGLVDTSLDGEFDAEQACKFMKIGLLCTQESPKLRPSMSSVVKMLTGKIDVDDSKITKPALISDFMDLKVRRNEESSSYVKNSSTYDTYSSSDNHDTTMSSATTTTFAAVYDESM 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01750 366 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 122 338 - -
Vimu4g01750 366 SUPERFAMILY Protein kinase-like (PK-like) 37 296 IPR011009 -
Vimu4g01750 366 Gene3D Transferase(Phosphotransferase) domain 1 125 332 - -
Vimu4g01750 366 ProSitePatterns Protein kinases ATP-binding region signature. 65 87 IPR017441 GO:0005524
Vimu4g01750 366 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 33 133 - -
Vimu4g01750 366 SMART serkin_6 59 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01750 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Vimu4g01750 366 Gene3D Phosphorylase Kinase; domain 1 24 124 - -
Vimu4g01750 366 Pfam Protein kinase domain 60 121 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01750 366 Pfam Protein kinase domain 123 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01750 366 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g29720 107 300 - -
Vimu4g01750 366 ProSiteProfiles Protein kinase domain profile. 59 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01750 Vimu-Chr4 19047272 19049809 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01750 47 351 Receptor kinase-like Gene Family AT1G53440 46.512 2.55e-87 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vimu4g01750 Pkinase 5.3e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01750 - - gmx:100782320 582.793