Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01745 ATGAGCAACATAAGCATGGTAGAGGCAAAGTTGCCACCAGGGTTCAGGTTCCATCCAAGAGATGAAGAGCTTGTGTGTGATTACTTGATGAAGAAGGTCACACACAATGATTCCCTTCTCATGATAGATGTTGACCTTAACAAGTGTGAACCTTGGGATATTCCTGACACAGCATGTGTGGGAGGGAAAGAGTGGTATTTCTATACACAAAGAGACCGTAAGTATGCAACAGGGTTACGCACAAATCGTGCCACTGCCTCAGGGTACTGGAAGGCCACAGGGAAGGACAGGCCTATCCTACGCAAGGGCACCCTTGTTGGCATGAGGAAGACTTTGGTGTTCTATCAAGGAAGGGCACCCAAAGGGAGAAAAACTGAGTGGGTGATGCATGAATTTCGCATTGAAGGGCCCCATGGACCTCCTAAAGTTTCTTCTTCTAAGGAAGACTGGGTTTTGTGTAGAGTGTTCTACAAAAACAGAGAAGTTTCAGCCAAACCTAGCATGGGTAGCTGCTATGAAGACACAGGCTCTTCATCTCTTCCTGCATTAATGGACTCTTACATTAGTTTTGATCAAACTCAAGCTCATGCAGATGAGTTTGAGCAAGTGCCCTGCTTCTCCATTTTCTCTCAGAACCAAGCAAACCCCATTTTCAACCACATGACAACCATGGAGCCTAAATTACCTGCTGCTGCATATGGAGGAGCACCGAATTTGGGTTACTGCTTAGACCCTTTATCCTGTGACAGAAAAGTGTTGAAAGCTGTTTTGAGTCAGATAACAAAGATGGAAAGGAATCCTCTGAACCAAAATCTCAAAGGGTCTCCAAGCTTTGGAGAAGGAAGCTCAGAGAGTTACTTATCTGAAGTGGGGATGCCTCACCTTTGGAACAATTACTGA 900 0.4522 MSNISMVEAKLPPGFRFHPRDEELVCDYLMKKVTHNDSLLMIDVDLNKCEPWDIPDTACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRPILRKGTLVGMRKTLVFYQGRAPKGRKTEWVMHEFRIEGPHGPPKVSSSKEDWVLCRVFYKNREVSAKPSMGSCYEDTGSSSLPALMDSYISFDQTQAHADEFEQVPCFSIFSQNQANPIFNHMTTMEPKLPAAAYGGAPNLGYCLDPLSCDRKVLKAVLSQITKMERNPLNQNLKGSPSFGEGSSESYLSEVGMPHLWNNY 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01745 299 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 207 - -
Vimu4g01745 299 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Vimu4g01745 299 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Vimu4g01745 299 SUPERFAMILY NAC domain 2 159 IPR036093 GO:0003677|GO:0006355
Vimu4g01745 299 Pfam No apical meristem (NAM) protein 12 134 IPR003441 GO:0003677|GO:0006355
Vimu4g01745 299 FunFam NAC domain-containing protein 100-like 20 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01745 Vimu-Chr4 18992013 18997098 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01745 2 297 NAC Transcription Factor Family AT1G56010 60.252 1.52e-125 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu4g01745 NAM 1.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01745 - - gmx:100301890 588.956