Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01744 ATGGCTTCCGAGAACCTAAACCCCGTCACAGTCACCAAAGCCATAGACGCGCTTCTCAAATGGCGTCGCTCCCAATCGGAGACTCAAAAGCCCAAACTCTTCGATCAAGACGAAGAATTTGTGTACCTCGTCGTAACGCTGAAGAAGATTCCGGCGAAATCTCGCGTTAACCCTTACAAGATCCCTCTTCCACACTCCCTGTTCTCGCAGTTCTCCGAACAGTGTCTCATCCTCGACGACCGGCCCAACAAGGCCCGCGTGACCAAGGCCCAGGCCCAGGCCAAGGTCCAATCCGAGTCCATCCCCATAGCAAAAATCCTGAAGCTGTCAAAGCTGGCATCCGATTATCGTGCTTTTGAGGCGAAGCGGAAGCTCTGTGATTCCTACGATTTGTTTTTTGCAGAGAAGAATATTGTGCCGTTGCTTCCTCGGCTACTTGGGAAGCAATTTTTCAAGAAGAGGAAGTTGCCGGTGCCGGTGGATCTGAAGAAGAGTAACTGGAAGGAGCAGGTGGAGAGGGCGTGCTCGTCCGCGATGCTGTTCATGCGGACAGGCACGTGTAGCGTTGTTAGGGTTGCAAAGGTGGGGATGGAGAGAGACTCAATTGTGGAGAACGTGATGGCTGCGGTTGAGGGGATTGTGGAGGTTGTGCCGAAGAAGTGGGGGAATGTGCGGTCGCTGCATCTGAAGCTATTGGAGAGTGTGGCGTTGCCTGTGTATCAGGTTGTTCCGGATTTGAAGTTGAGGATTGAGGGTGCTAACGAGCAGGCTGAGATAAAAGAGAAGAAGAAGAAGAGGAAAAACGATGAGGAGGTTCGTGAATCGGCAAAGAAGAAGGGGAGGATTCATGAAGTTAGGTATATGGATGAGAATGGTGGTGAGGATGAGATTGAAAATGAATTGGCGAGTGATGATGGTGGTGGCGATGTCAATGTGGATGAGAAGACGAAGAGAGGGGTTTCGAGTGTGTTGAATGGTGGGAAGAGGTTGAAGAAATCGTCTGGTGTTAAGGAGAAGAGGAAAAAGGGGCAGAGTGGAAGTGAGTTGGTTGCTGAGGATAAGGAATCTAGTGCCAATGACAAGAAGAAAAAGGTGAAGAGTGGGAGTGAATTGGTTGTTAGGGATGAGGAATCTGGCGTGAAGAAGACGAAGAAAGGGGAATTGAAGAAGATGAAAACAGGGGAAGTGAAGGTGAAGGCTGTGAAAAGTGTGAAGGCTAAGAAAAGTAAGAAGGACATTTGGCAGGAGAATGTTGAGAACAAATTGGAGCTTTCAGTGAGGTGA 1284 0.4945 MASENLNPVTVTKAIDALLKWRRSQSETQKPKLFDQDEEFVYLVVTLKKIPAKSRVNPYKIPLPHSLFSQFSEQCLILDDRPNKARVTKAQAQAKVQSESIPIAKILKLSKLASDYRAFEAKRKLCDSYDLFFAEKNIVPLLPRLLGKQFFKKRKLPVPVDLKKSNWKEQVERACSSAMLFMRTGTCSVVRVAKVGMERDSIVENVMAAVEGIVEVVPKKWGNVRSLHLKLLESVALPVYQVVPDLKLRIEGANEQAEIKEKKKKRKNDEEVRESAKKKGRIHEVRYMDENGGEDEIENELASDDGGGDVNVDEKTKRGVSSVLNGGKRLKKSSGVKEKRKKGQSGSELVAEDKESSANDKKKKVKSGSELVVRDEESGVKKTKKGELKKMKTGEVKVKAVKSVKAKKSKKDIWQENVENKLELSVR 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01744 427 Pfam Ribosomal protein L1p/L10e family 32 235 IPR028364 -
Vimu4g01744 427 CDD Ribosomal_L1 11 239 IPR028364 -
Vimu4g01744 427 SUPERFAMILY Ribosomal protein L1 36 240 IPR023674 -
Vimu4g01744 427 MobiDBLite consensus disorder prediction 261 388 - -
Vimu4g01744 427 MobiDBLite consensus disorder prediction 261 292 - -
Vimu4g01744 427 MobiDBLite consensus disorder prediction 339 388 - -
Vimu4g01744 427 Gene3D - 85 177 IPR016095 -
Vimu4g01744 427 Coils Coil 243 279 - -
Vimu4g01744 427 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 13 234 - -
Vimu4g01744 427 FunFam Ribosomal protein L1p/L10e family 85 176 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01744 128 230 Cytoplasmic Ribosomal Protein Gene Family AT2G27530 31.068 2.53e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01744 K14775 - gmx:100815650 511.146