Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01732 ATGAAATCCGGCAGAGACAAAGAGAAAGAGAGCGATCGCTGCATCAGTTCGCATATGCAGACCCTCCATCGCCGTCTTCTCCACGCCCTAAACCTTGGCACCAGACATTTTGATGAGAAGACAAATAGGTGGAGGTGGCAGTGCGCCAACATTGAAGTGCAGAAAAATGTACTACGATCAATTGGTGCTTTTCTTGATTCCTTATCGGGCGATGCACGTGCAGCACGTCATGCTGTTGTTAAGGTGTATAGTTTTCTTCCTTTTGTTTTTGGGAGTTTAAGTCTTGAATCTGTTCCTGATATTTTAGGAGCATTATTATGGATTCTTCAATGCAAAAATGAGGCTTTATTAAGCATGGCGTCAAATGTTGCAGTGAAGTTGGTTAGCGTTCTGCCTAATCCGTTGTTGCAATCACATATGTTGGATCTTGTTTATTGTCTATCATCCTTGCTATCTTCACATCAAGTAGAAGTTGCTATACCCTGTGCTACCACTTTGAATTTTGTAATCTCAAATTTGAGTGCTACAAATGAGAAGGATGTTATGGAAGCACTGAAAGAAACGGAGGCTTCCCTTCGGATTGTTGGAAATATAAAGGATTTTGCTGAAGGTGTAAAGAAAATTGAGTATTTCGAAGAGATGACTTTACTTTTGAGCACTATACTATGGCGCTGGCCTCCGTCTAGGTTCTCTGTTTGTAATGATGTAATACTTATGAAAGGTTTAGCAAACATCCATACAAAGACAGATAGTTCTATTAAACTTGCACTTCTAAAGTTGTACACGTCAATAGCTTTATGTGATTCTGCAGCAAGAAGACTTATAGAGGATGAAGAAATATTTCCACAAATGTTTGTTCAGGCAATTGGAAAATCAAACCCTCATGCTATTCGGATAGAGGGGTTTAGGCTTGCTCAGTGCCTATTGAGATCCCAAGATAATTGTTTAAAAGTGGTTGGTTTGTGTGGTGATGCTCTTGTTGAGGCCATAATTTGTGGAATGACAGAAACTAGGCTGACTTCTAAAAGGTTTGGAAACAACCATGGGTCTTTGTCAGTGGAAGCATGCCAGTTGGCTCTAATAACACGCTGGGCAGGTGATCATCATACCAACTTTTGGAAACAAGGAATTGATAGAGTCCTTCTTAGTCTTCTGATTGAAAATATTGAAGACCAATTGTTTGAACCCGTCTTGGCTTTGGAAAAACAAATATATATGGCAAAAGAGGGATTAAAAGCCAATTATCATCTTGGTCTTAGGAGTTATCTGTGGGACATTCTTGGGTGGCTTACAATTCATTGTGGAGAAAATTTAAACCCTTATACTCGTGGTAGTGAGCTCTGCATCAAGTTACTAATTACATGTGCATGCTTGAGTTTTGTGGATACACTTGAAAAATGGTGCAGAATTTGTCAAAAGGATATTGATGATCATTTTCAAAGTGAACCAGTATCAAGAACCGTTCTAATGATGATTCATTCTCCATGTAATTCCATCTCCTCACACACTAAATTCTTATTATCAGATGTACTGAAGGTGAAAGGCATGCCATGCTTGAAAAGCTTATTACATACTCTAGATTATACATCATCCCTAGAAAGCTATGGTTCATTTGATAAACTTCAACTGGTTATTAATTTAATTGGGTTTACTTGTCTTTCAAGTTTACCACAATACCGAAGATGTATCATTGAGAGCAAAGGGATAAAGGTGATTGTTCTTCTTCTGAAACGATGCTTAAATAATGACATTCATATCGAAAGGCAAAGCTTTACTCCTCATTTGCATACACATGAAAGGTCTTGTTGCTGTTTTGATAAAGAAGATTGGGAAGGCTCCAACATTCTTTTATTTTATAGTTTGTTGGCCTTAACAGAAATTCTTCATCAGTGTGACCTTTTACAAGAGAATCCTCAGCAATTTTCTGGAGAGGTGACAAACATTACGCCACAGTTTGTTAGCAAACTTCAAGAGATCTGTAAAAGCAACTCTTTCAGTCATGGTGTGAGATGGTATGTTTCTTATATTCTAACTAATTTTGGATATTATGGTTTCCCAACTGAATTAGCCAAAAGGATCGGAGAATCTCTCAATAAGGAAGAATACTCAGATATGAAGCTTGTCTTAGCAAATGGGCAATCTCTGAGTGTTCATGCTGCTATTCTTGCTGTTCGATGTCCATCACTAGTGCCTCCTCAATTGTTACTCTGTAAGAAGAGTTCTAAAGAGATAGTAGATGAGTTTGTCAGAGGGACCGTGAGAGAAGTTCGATTATCTTCTCATGTTGATTATGAAGCATTGGTGTTGTTGTTGAAATATGTATACTCGGGATGCTTACATGCCAGTGAAGAAACAGCAAAGAAGCTAAAAGTTCTTGCTAAGCGCTGCAATCTACAGCCTTTGTTCCAAATGCTTGACAGACAGCGTCCTAAATGGGGCTTACCTTTCCCCAACTTTAATCTTACGTCAGCTTTTGGTTTAGCTGGAAGTTGTTTTTCGGATATCATATTGGGAGCTAAATCAAATGAGCTTGTTGGGTGGACATGCGATATTTGTTCTGACACAGTACCCCATATGCATGTTCACAAAGTTATATTGCAGTCTGGTTGTTATTATCTACAAGGTTTGTTCCGGTCAGGAATGCAAGAAAGGTAA 2655 0.3853 MKSGRDKEKESDRCISSHMQTLHRRLLHALNLGTRHFDEKTNRWRWQCANIEVQKNVLRSIGAFLDSLSGDARAARHAVVKVYSFLPFVFGSLSLESVPDILGALLWILQCKNEALLSMASNVAVKLVSVLPNPLLQSHMLDLVYCLSSLLSSHQVEVAIPCATTLNFVISNLSATNEKDVMEALKETEASLRIVGNIKDFAEGVKKIEYFEEMTLLLSTILWRWPPSRFSVCNDVILMKGLANIHTKTDSSIKLALLKLYTSIALCDSAARRLIEDEEIFPQMFVQAIGKSNPHAIRIEGFRLAQCLLRSQDNCLKVVGLCGDALVEAIICGMTETRLTSKRFGNNHGSLSVEACQLALITRWAGDHHTNFWKQGIDRVLLSLLIENIEDQLFEPVLALEKQIYMAKEGLKANYHLGLRSYLWDILGWLTIHCGENLNPYTRGSELCIKLLITCACLSFVDTLEKWCRICQKDIDDHFQSEPVSRTVLMMIHSPCNSISSHTKFLLSDVLKVKGMPCLKSLLHTLDYTSSLESYGSFDKLQLVINLIGFTCLSSLPQYRRCIIESKGIKVIVLLLKRCLNNDIHIERQSFTPHLHTHERSCCCFDKEDWEGSNILLFYSLLALTEILHQCDLLQENPQQFSGEVTNITPQFVSKLQEICKSNSFSHGVRWYVSYILTNFGYYGFPTELAKRIGESLNKEEYSDMKLVLANGQSLSVHAAILAVRCPSLVPPQLLLCKKSSKEIVDEFVRGTVREVRLSSHVDYEALVLLLKYVYSGCLHASEETAKKLKVLAKRCNLQPLFQMLDRQRPKWGLPFPNFNLTSAFGLAGSCFSDIILGAKSNELVGWTCDICSDTVPHMHVHKVILQSGCYYLQGLFRSGMQER 884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01732 884 SMART BTB_4 703 813 IPR000210 GO:0005515
Vimu4g01732 884 ProSiteProfiles BTB domain profile. 703 783 IPR000210 GO:0005515
Vimu4g01732 884 Gene3D Potassium Channel Kv1.1; Chain A 685 808 IPR011333 -
Vimu4g01732 884 PANTHER OS06G0674800 PROTEIN 7 883 IPR044953 -
Vimu4g01732 884 SUPERFAMILY POZ domain 684 804 IPR011333 -
Vimu4g01732 884 SUPERFAMILY ARM repeat 50 726 IPR016024 -
Vimu4g01732 884 Pfam BTB/POZ domain 695 804 IPR000210 GO:0005515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vimu4g01732 BTB 1.3e-05 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01732 - - gmx:100786565 1468.37