Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01727 ATGAGGCCGATTTTGATGAAGGGCCACGAGAGGCCACTCACGTTCCTTAAGTACAACAGGGACGACGATCTCCTCTTCTCCTGCGCCAAGGACCACAACCCTACGGTCTGGTTCGCCGACAATGGTGAATGCCTCGACACTTATCGCGCCACAACAGCGTTGTTTGGTGCTGCGACGTCTCAAGCAAGAGATTCTGGTCGACTCATAACGGGGAGTGCGGATCAGACCGCGAAGCTATGGAACGTGCAGTCTGGTCAGCAGTTGTTCACCTTCAATTTTGATTCTCCGGCCCGGTCTGTCGATTTTTCTGTCGGGGATAAGCTCACTGTCATTACCACTGATCCTTTTATGGAATTGCCCTCTGCAATCCATGTCAAGCGCATTGCAAAAGATCCCTCCGAACATAACATTTTCCCCCTTGCTTATCTATTGTCT 435 0.5103 MRPILMKGHERPLTFLKYNRDDDLLFSCAKDHNPTVWFADNGECLDTYRATTALFGAATSQARDSGRLITGSADQTAKLWNVQSGQQLFTFNFDSPARSVDFSVGDKLTVITTDPFMELPSAIHVKRIAKDPSEHNIFPLAYLLS 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01727 145 ProSiteProfiles Trp-Asp (WD) repeats profile. 6 47 IPR001680 GO:0005515
Vimu4g01727 145 Gene3D - 1 142 IPR015943 GO:0005515
Vimu4g01727 145 SUPERFAMILY WD40 repeat-like 4 111 IPR036322 GO:0005515
Vimu4g01727 145 ProSiteProfiles Trp-Asp (WD) repeats profile. 64 90 IPR001680 GO:0005515
Vimu4g01727 145 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01727 Vimu-Chr4 18758572 18759076 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01727 1 136 Eukaryotic Initiation Factors Gene Family AT2G46280 69.118 5.62e-66 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01727 K03246 - gmx:100793485 228.794