Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01725 ATGGTGGTAATAAAGTGGAGATGTCCAAAGCAAACCATCCCTCCCAATTCTGATACTGGTTTCCAAAAGAAACTCCTCTATCTAGAATCCATAGGCATTGACTCTTTCTCACTTATTGAAAACCATCCAATGCTGATCACTACCTCTCTTACAGACATAAAATCGACTGTGGAATACATCACCTCCATGGATTTCACTGCAACAGAGTTTCGGCGTATGGTTGGCATGTGCCCGGAGATTCTGACCACCAATGTCTCTGACATCATACCGGTGTTCACCTTCCTTCATAGCGAGGTACACGTGCATTGTTCAGACATTAAACGGGTCATAAATCGCCGTCCCAGGTTGCTTGTGTGCAGTGTCAGTAAGCGACTTCGTCCTACACTATACTTCCTCCAAAGTATTGGCATAGAAGAGGTAAACAAGCATACTGACTTACTATCATGTAGTGTTGAAGAAAAGTTCATGCCAAGAGTAGATTACTTTGAGAATATTGGATTTTCTCGCCGTGATGCAACTTTAATGTTTCGCAGATTTCCTCAGCTGTTTTGTTATAGTATTAAACATAATTTGGAGCCTAAATATAGTTACTTTGTGGTGGAGATGGGGAGAGATTTGAAGGAGCTGATAGAATTTCCACAATATTTCTCATTTAGCCTTGAGAATAGAATTAAGCCTAGGCATAAAAAGTGTGTAGAAATGGGGCTGTGTTTTCCTCTCCCTGTGTTGTTAAAAACAAAGGAAGTGAAATTTCAAAGTAGATTGGAAGTATTTGTAAATTCTTCAACACCCTTGAAAACATCCCCTCTGTGGTGTGCTGGCTCTGATTTTTATCAAGTATAG 843 0.4021 MVVIKWRCPKQTIPPNSDTGFQKKLLYLESIGIDSFSLIENHPMLITTSLTDIKSTVEYITSMDFTATEFRRMVGMCPEILTTNVSDIIPVFTFLHSEVHVHCSDIKRVINRRPRLLVCSVSKRLRPTLYFLQSIGIEEVNKHTDLLSCSVEEKFMPRVDYFENIGFSRRDATLMFRRFPQLFCYSIKHNLEPKYSYFVVEMGRDLKELIEFPQYFSFSLENRIKPRHKKCVEMGLCFPLPVLLKTKEVKFQSRLEVFVNSSTPLKTSPLWCAGSDFYQV 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01725 280 PANTHER CGI-12 PROTEIN-RELATED 37 260 IPR003690 GO:0003690|GO:0006355
Vimu4g01725 280 Gene3D Transcription termination factor 3, mitochondrial 77 261 IPR038538 -
Vimu4g01725 280 SMART mt_12 71 102 IPR003690 GO:0003690|GO:0006355
Vimu4g01725 280 SMART mt_12 139 168 IPR003690 GO:0003690|GO:0006355
Vimu4g01725 280 SMART mt_12 36 66 IPR003690 GO:0003690|GO:0006355
Vimu4g01725 280 SMART mt_12 107 138 IPR003690 GO:0003690|GO:0006355
Vimu4g01725 280 SMART mt_12 173 205 IPR003690 GO:0003690|GO:0006355
Vimu4g01725 280 SMART mt_12 206 237 IPR003690 GO:0003690|GO:0006355
Vimu4g01725 280 FunFam Transcription termination factor MTEF1, chloroplastic 95 259 - -
Vimu4g01725 280 Pfam mTERF 16 105 IPR003690 GO:0003690|GO:0006355
Vimu4g01725 280 Pfam mTERF 98 252 IPR003690 GO:0003690|GO:0006355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vimu4g01725 mTERF 2.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01725 K15031 - gmx:100804440 503.827