Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01723 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACCATCACGCTGGAGGTCGAGAGCAGCGACACCATTGACAACGTCAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAACTGGAAGATGGTCGCACACTTGCTGATTATAACATACAAAAGGAATCTACCCTTCACTTGGTCTTGAGGCTCAGAGGAGGAACCATGATTAAAGTGAAGACTCTTACTGGAAAAGAAATTGAAATCGACATTGAGCCTACTGATACGATTGACCGGATCAAGGAACGTGTAGAAGAAAAGGAAGGAATTCCACCTGTGCAGCAGAGACTCATATATGCAGGTAAGCAGCTTGCTGACGACAAAACAGCGAAAGAGTACAACATTGAGGGTGGTTCAGTACTTCATTTGGTGCTTGCATTGAGGGGTGGTATTTATTAA 465 0.4538 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGIY 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01723 154 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Vimu4g01723 154 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Vimu4g01723 154 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Vimu4g01723 154 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Vimu4g01723 154 SUPERFAMILY Ubiquitin-like 78 152 IPR029071 -
Vimu4g01723 154 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Vimu4g01723 154 SMART ubq_7 77 148 IPR000626 GO:0005515
Vimu4g01723 154 SMART ubq_7 1 72 IPR000626 GO:0005515
Vimu4g01723 154 PANTHER UBIQUITIN 1 78 - -
Vimu4g01723 154 CDD Ubl_ubiquitin 1 76 - -
Vimu4g01723 154 CDD Ubl_NEDD8 79 152 IPR038738 -
Vimu4g01723 154 PRINTS Ubiquitin signature 53 74 IPR019956 -
Vimu4g01723 154 PRINTS Ubiquitin signature 11 31 IPR019956 -
Vimu4g01723 154 PRINTS Ubiquitin signature 32 52 IPR019956 -
Vimu4g01723 154 FunFam NEDD8 protein 77 154 - -
Vimu4g01723 154 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Vimu4g01723 154 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Vimu4g01723 154 Gene3D - 78 154 - -
Vimu4g01723 154 Gene3D - 1 77 - -
Vimu4g01723 154 FunFam Polyubiquitin 3 1 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01723 Vimu-Chr4 18735850 18739593 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01723 1 76 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 2.33e-50 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01723 K12158 - gmx:100800163 290.812