Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01720 ATGGGGAAAGGAAGAGCACCATGTTGTGATAAGACTAAAGTGAAGAGAGGTCCTTGGAACCCTGCAGAAGACCTTAAACTCATAGCCTTCATCCAGAAATATGGCCATGAAAACTGGCGAGCTCTCCCAAAACAAGCTGGGCTTCTGAGATGTGGAAAAAGTTGTCGTTTGAGATGGATTAATTATCTAAGACCTGATGTGAAAAGAGGAAATTTTACACCAGAGGAAGAGGAAACCATCATAAGACTTCACAGGGCAATGGGAAACAAGTGGTCAAAGATTGCATCACGTTTGCCTGGTAGAACAGACAATGAGATCAAGAATGTGTGGAACACCCACTTAAAGAAAAGGATGGCTCCTAAAAAAACTTCAGAATCAAGTACAGATGAATCCAAGCCAGAATCAACAATAACTTCCACCTCTTCCTCTTCCTCTCAGTCGCTTTTCTCAATTGAGAGACCAAATTCACCCAAGAGCACAACACCTTATGATAATGAATTTTGTGACCAAGCAGAGCAATTATCAATGGAAGATCAAATCGAGCAGGATTCAGAAAAAGCAGTGTCAAGTGAACTAATTGGCATGACTGAGGATCCAAAAGAGTCATCTGCTTCTTTTTCTTGTGAGTCAAATATTGTAAATTCAGGCCAGAATGTTGCAGACAAACCAGAACAACAATTGGGTTCTCCATCATCCTACCTAGGACCTTATGATGTCGGTCATATTTTAGAAATTCCATGGGAACCAGATTATGAGTTTTGGAAGTTGTTAGATGATGATAGCCCTGGATCTTTTCAATCAAAGGAAGTCCAATTAGGTGAGTTCTCAGCCAACCAAAACATCATTCTTGGAGAAGAGGGTGAAACAAGGAAGTGGAGCAATGATTTTGAGAATGAGTTTGGAGTAGTAGGTGAGATAAAGGAGTCAAACAAGGATCATAATTTCCTACCAAAAAACTATGCAGTTGAGCCAGAAATGGACCACACAAAGGCATTTGATTTCGATGATATGACACAAGCAGAATCTGAATTGGACTTTTGTTCTATCCCATTATGGCTCTCTTCGCCTCAAAATACTACTCTCTACTTTAATACAGACCAGTAG 1104 0.4022 MGKGRAPCCDKTKVKRGPWNPAEDLKLIAFIQKYGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTPEEEETIIRLHRAMGNKWSKIASRLPGRTDNEIKNVWNTHLKKRMAPKKTSESSTDESKPESTITSTSSSSSQSLFSIERPNSPKSTTPYDNEFCDQAEQLSMEDQIEQDSEKAVSSELIGMTEDPKESSASFSCESNIVNSGQNVADKPEQQLGSPSSYLGPYDVGHILEIPWEPDYEFWKLLDDDSPGSFQSKEVQLGEFSANQNIILGEEGETRKWSNDFENEFGVVGEIKESNKDHNFLPKNYAVEPEMDHTKAFDFDDMTQAESELDFCSIPLWLSSPQNTTLYFNTDQ 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01720 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Vimu4g01720 367 SMART sant 15 65 IPR001005 -
Vimu4g01720 367 SMART sant 68 116 IPR001005 -
Vimu4g01720 367 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Vimu4g01720 367 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Vimu4g01720 367 FunFam Transcription factor RAX3 9 69 - -
Vimu4g01720 367 MobiDBLite consensus disorder prediction 111 165 - -
Vimu4g01720 367 FunFam MYB transcription factor 70 145 - -
Vimu4g01720 367 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Vimu4g01720 367 MobiDBLite consensus disorder prediction 130 165 - -
Vimu4g01720 367 CDD SANT 71 114 IPR001005 -
Vimu4g01720 367 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 201 - -
Vimu4g01720 367 Gene3D - 70 142 - -
Vimu4g01720 367 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Vimu4g01720 367 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Vimu4g01720 367 CDD SANT 18 63 IPR001005 -
Vimu4g01720 367 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Vimu4g01720 367 MobiDBLite consensus disorder prediction 111 129 - -
Vimu4g01720 367 Gene3D - 16 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01720 Vimu-Chr4 18695841 18699417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01720 1 120 MYB Transcription Factor Family AT1G56160 81.667 2.32e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu4g01720 Myb_DNA-binding 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01720 K09422 - gmx:100101836 562.762