Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01714 ATGGCAGAGGAGGTGGTTCTGCTAGATTCGTGGGCAAGTCCATTTGGGATGAGAGTGAGGATTGCACTTGCTGAAAAGGGTATAAATTATGAGTACAAAGAAGAGGACTTGTGGAACAAGAGCCCTCTCTTCCTTCAAATGAACCCGGTTCACAAGAAAGTTCCGGTTCTCATTCACAAGGGAAAGCCCATTTGCGAATCTCTCATTGTTGTTCAGTACATTGATGAGGTCTGGTTTGACACAAATCCCTTGTTACCTTCTGACCCTTACCAGAGAGCAGAAGCTAGATTCTGGGCTGACTATGTTGACAAGAAGATATATGATGCTGGAAGGAAGATTCTTTCGTCATCAAAAGCAGAAGAAAGAGAAGTTGGCAAGAAGGAGTTGATAGAAGCCCTTAAAGTGTTGGAGGAACAGCTGGGAGAAAAGAGTTATTTTGGAGGGGACGATCTTGGTTTTGTGGATATAGCAGTTGTACCATTCTACACTTGGTTCAAATCCTATGAAACTTTTGGCAGCTTTAGCGTTGAGAGTGAGTGCCCCAAGCTTATTGCTTGGGCCAAGAGGTGCCTCCAGAAAGAGAGTGTTTCCAAGTCTCTTCCTGATCAGCATACGGTCAATGAGTTCGTTGTGGAGAGGAGAAAGAAATTAGGCATTGAGTAG 663 0.4419 MAEEVVLLDSWASPFGMRVRIALAEKGINYEYKEEDLWNKSPLFLQMNPVHKKVPVLIHKGKPICESLIVVQYIDEVWFDTNPLLPSDPYQRAEARFWADYVDKKIYDAGRKILSSSKAEEREVGKKELIEALKVLEEQLGEKSYFGGDDLGFVDIAVVPFYTWFKSYETFGSFSVESECPKLIAWAKRCLQKESVSKSLPDQHTVNEFVVERRKKLGIE 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01714 220 SUPERFAMILY Thioredoxin-like 5 106 IPR036249 -
Vimu4g01714 220 SUPERFAMILY GST C-terminal domain-like 77 217 IPR036282 -
Vimu4g01714 220 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 217 IPR010987 -
Vimu4g01714 220 CDD GST_C_Tau 89 213 IPR045074 GO:0004364|GO:0006749
Vimu4g01714 220 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 8 206 IPR045073 -
Vimu4g01714 220 CDD GST_N_Tau 5 78 - -
Vimu4g01714 220 FunFam Glutathione S-transferase U20 88 220 - -
Vimu4g01714 220 Coils Coil 119 139 - -
Vimu4g01714 220 SFLD Glutathione Transferase (cytosolic) 2 218 IPR040079 -
Vimu4g01714 220 SFLD Main.3: Omega- and Tau-like 2 218 IPR045073 -
Vimu4g01714 220 Pfam Glutathione S-transferase, N-terminal domain 6 76 IPR004045 -
Vimu4g01714 220 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 3 82 IPR004045 -
Vimu4g01714 220 Gene3D Glutaredoxin 1 87 - -
Vimu4g01714 220 FunFam Tau class glutathione S-transferase 1 87 - -
Vimu4g01714 220 Gene3D - 88 220 - -
Vimu4g01714 220 Pfam Glutathione S-transferase, C-terminal domain 116 193 IPR004046 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01714 Vimu-Chr4 18644641 18645526 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01714 1 220 Glutathione S-transferase Gene Family AT1G17180 64.091 3.41e-110 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01714 K00799 - gmx:547520 372.859