Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01711 ATGTCGCGGAAGGGTTTGATGGAGCAAGACCTGAGTAAGTTGGATGTGACAAAGTTGCATCCACTTTCTCCAGAAGTCATATCTCGGCAAGCTACTATTAATATTGGCACTATTGGTCATGTGGCACATGGCAAGTCAACAGTTGTGAAAGCAATATCTGGTGTCCAGACTGTGCGTTTCAAAAATGAGTTGGAGCGTAACATCACAATCAAGCTTGGCTATGCAAATGCAAAAATATACAAGTGTGAAGATGAACGGTGTCCAAGGCCTATGTGCTACAAGGCTTATGGAAGTGGGAAAGAAGATAGTCCAATGTGTGATGTGCCGGGGTTTGAAAACAGCAAGATGAAACTGCTGAGACATGTTTCATTTGTGGATTGTCCGGGACATGATATTCTCATGGCCACTATGCTTAATGGAGCAGCAATCATGGATGGAGCTTTATTACTCATAGCTGCTAATGAAAGCTGCCCACAACCACAAACCTCTGAGCACTTAGCTGCTGTGGAAATTATGCGTCTACAGCATATAATAATCCTTCAAAACAAGGTTGACTTGATTCAAGAAAATGTAGCAATCAATCAGCATGAAGCAATTTCAAAGTTTATACAGGGAACTGTTGCCGATGGTGCACCAGTAGTACCCATTTCTGCACAGTTAAAGTATAATATTGATGTTGTGTGCGAGTATATTGTGAAGAAAATCCCAATCCCTGAGAGGAACTTTGTTTCTCCACCTAACATGATTGTAATCCGGTCATTTGATGTCAATAAACCTGGTTTTGAGGTTGATGAAATAAAAGGAGGTGTAGCTGGTGGAAGCATTCTGAGGGGTGTTTTGAAGGTGAATCAATTCATTGAAGTTCGACCTGGGATTGTTGTTAAAGATGAGAGTGGAAATATCCGATGCACACCAATATACTCAAGAATAGTTTCATTGTATGCTGAACAAAATGAGCTTCAATTTGCTGTACCTGGAGGCCTAATCGGTGTTGGGACAACAATGGATCCCACACTGACACGTGCTGATAGGTTGGTAGGTCAAGTTCTAGGAGAGGTTGGATCACTACCTGAGGTTTTTGTTGAATTGGAGGCAAGGTCAGAGAGACAAGGGAAGGTATCGAAGCTGGCGAAGGGAGAGATGTTAATGTTGAACATAGGATCAATGTCAACGGGGGCTAGAGTAATTGCTGTGAAAAATGACTTGGCAAAGTTGCAACTCACATCCCCTGTGTGCACTAGCAAGGGTGAGAAGATAGCACTTAGTCGACGTGTTGAGAAGCATTGGCGTCTTATTGGATGGGGCCAAATCCAAGCAGGAATCACCCTTGACGTCCCTCCTGCACCCCATCTCAGTTGA 1359 0.4319 MSRKGLMEQDLSKLDVTKLHPLSPEVISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDERCPRPMCYKAYGSGKEDSPMCDVPGFENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPQTSEHLAAVEIMRLQHIIILQNKVDLIQENVAINQHEAISKFIQGTVADGAPVVPISAQLKYNIDVVCEYIVKKIPIPERNFVSPPNMIVIRSFDVNKPGFEVDEIKGGVAGGSILRGVLKVNQFIEVRPGIVVKDESGNIRCTPIYSRIVSLYAEQNELQFAVPGGLIGVGTTMDPTLTRADRLVGQVLGEVGSLPEVFVELEARSERQGKVSKLAKGEMLMLNIGSMSTGARVIAVKNDLAKLQLTSPVCTSKGEKIALSRRVEKHWRLIGWGQIQAGITLDVPPAPHLS 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01711 452 Gene3D Translation factors 242 354 - -
Vimu4g01711 452 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 30 239 IPR000795 GO:0003924|GO:0005525
Vimu4g01711 452 PRINTS GTP-binding elongation factor signature 123 133 IPR000795 GO:0003924|GO:0005525
Vimu4g01711 452 PRINTS GTP-binding elongation factor signature 139 150 IPR000795 GO:0003924|GO:0005525
Vimu4g01711 452 PRINTS GTP-binding elongation factor signature 177 186 IPR000795 GO:0003924|GO:0005525
Vimu4g01711 452 PRINTS GTP-binding elongation factor signature 34 47 IPR000795 GO:0003924|GO:0005525
Vimu4g01711 452 CDD eIF2_gamma_III 357 437 IPR015256 -
Vimu4g01711 452 Pfam Initiation factor eIF2 gamma, C terminal 368 437 IPR015256 -
Vimu4g01711 452 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 SUBUNIT 3 FAMILY MEMBER 1 445 - -
Vimu4g01711 452 CDD eIF2_gamma 33 240 IPR044128 GO:0005525
Vimu4g01711 452 CDD eIF2_gamma_II 241 354 IPR044127 GO:0000049
Vimu4g01711 452 Gene3D - 30 240 IPR027417 -
Vimu4g01711 452 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 367 438 IPR009001 -
Vimu4g01711 452 SUPERFAMILY Translation proteins 240 354 IPR009000 -
Vimu4g01711 452 Gene3D Translation factors 355 441 - -
Vimu4g01711 452 Pfam Elongation factor Tu domain 2 268 350 IPR004161 GO:0005525
Vimu4g01711 452 FunFam Eukaryotic translation initiation factor 2 subunit gamma 241 356 - -
Vimu4g01711 452 FunFam Eukaryotic translation initiation factor 2 subunit gamma 30 240 - -
Vimu4g01711 452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 242 IPR027417 -
Vimu4g01711 452 Pfam Elongation factor Tu GTP binding domain 32 236 IPR000795 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01711 Vimu-Chr4 18620741 18624672 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01711 1 449 Eukaryotic Initiation Factors Gene Family AT1G04170 87.716 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01711 K03242 - gmx:100805852 878.241