Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01701 ATGGGAAAATCAACTCTCACCGATTCTCTTGTTGCTGCTGCTGGAATTATTGCTCAAGAGGTGGCAGGTGATGTCCGTATGACTGATACCCGTGCAGATGAAGCTGAGCGTGGTATCACAATCAAGTCTACGGGTATCTCACTCTATTACGAGATGACTGATGAATCTCTCAAGAATTATAAGGGGGAGCGTAATGGGAATGAGTATCTCATTAATCTTATTGACTCCCCTGGACACGTTGACTTCTCATCTGAGGTTACTGCTGCACTCCGTATTACTGATGGAGCCCTAGTCGTGGTGGACTGTGTTGAAGGAGTCTGTGTCCAAACTGAAACTGTGCTACGTCAAGCTCTGGGAGAAAGGATTAGGCCTGTTCTGACTGTCAACAAGATGGACAGGTGCTTCCTTGAGCTCCAGGTGGATGGAGAGGAGGCTTACCAAACATTCCAGAGGGTTATTGAGAATGCTAATGTGATCATGGCTACATATGAAGATCCACTTCTGGGTGATGTTCAGGTCTACCCAGAGAAAGGAACTGTTGCTTTCTCTGCAGGGTTACATGGGTGGGCTTTTACCTTGACGAACTTTGCCAAGATGTATGCTTCAAAGTTTGGAGTTGATGAAGGAAAGATGATGGAAAGGTTATGGGGTGAAAACTTCTTTGATCCAGCCACAAAGAAATGGACCAGCAAGAACACTGGATCTGCTACCTGCAAGCGTGGGTTTGTTCAGTTCTGCTATGAGCCCATCAAACAGATCATTAACACTTGCATGAATGATCAGAAGGATAAGCTGTGGCCTATGCTGCAAAAACTTGGTGTCACCATGAAATCTGAGGAGAAGGACCTCATGGGTAAAGCATTGATGAAGCGGGTGATGCAAACCTGGCTTCCAGCAAGTACTGCCCTATTGGAAATGATGATCTTTCATCTTCCCTCTCCATCAACTGCCCAGAAGTACCGTGTGGAAAATTTGTACGAGGGTCCTCTTGATGATCAATATGCTGCAGCTATCAGAGCCTGTGACCCTGATGGTCCTCTGATGCTTTATGTGTCAAAGATGATTCCAGCATCTGACAAGGGTAGATTCTTTGCTTTTGGACGTGTGTTCTCTGGCAGGGTGTCAACTGGTTTAAAGGTGAGGATCATGGGACCAAATTATGTTCCTGGAGAGAAAAAGGATTTGTATGTCAAGAGTGTTCAACGTACTGTCATTTGGATGGGTAAGAGACAGGAAACTGTTGAGGATGTGCCATGTGGTAACACAGTTGCTATGGTGGGTTTGGACCAATTTATCACTAAGAATGCTACATTGACGAATGAGAAGGAAGTTGATGCTCACCCTATTAGGGCCATGAAGTTTTCTGTCTCCCCAGTTGTGCGTGTTGCTGTTCAGTGCAAGGTTGCCTCAGATCTTCCCAAACTTGTTGAAGGTCTAAAGCGATTGGCCAAATCAGATCCTATGGTTGTTTGTACAATTGAAGAGTCCGGTGAGCACATTGTTGCTGGTGCCGGGGAACTTCATCTTGAGATCTGTTTGAAGGACTTGCAGGATGATTTTATGGGTGGAGCTGAGATCATTAAATCTGACCCTGTTGTGTCATTCAGGGAGACTGTCCTGGAGAGGTCATGCCGCACAGTAATGAGCAAGTCACCTAACAAGCACAACCGTCTGTACATGGAAGCAAGGCCAATGGAGGATGGTCTGGCTGAAGCCATTGATGATGGCAAGATTGGACCAAGGGATGACCCAAAGGTTCGTTCTAAGATCTTGTCTGAAGAGTTTGGCTGGGACAAGGATCTTGCTAAGAAGATTTGGTGTTTTGGCCCAGAGACCACTGGACCCAACATGGTGGTTGATATGTGTAAGGGAGTGCAATATCTGAATGAAATCAAGGATTCTGTGGTTGCTGGATTCCAGTGGGCATCAAAAGAAGGTGCATTGGCTGAGGAGAACATGAGAGCTATATGCTTTGAAGTATGTGATGTGGTCCTTCACGCTGATGCTATCCACAGAGGTGGTGGTCAGATCATTCCTACTGCGAGGAGAGTGTTCTATGCTTCACAGCTAACTGCTAAACCCAGGCTTCTTGAGCCTGTGTACCTGGTTGAAATCCAGGCACCTGAGCAAGCTCTTGGTGGTATCTACAGTGTTCTGAATCAGAAACGTGGACACGTGTTTGAGGAAATGCAGAGGCCAGGTACCCCACTCTACAACATCAAGGCATATCTCCCTGTCATTGAGTCTTTTGGTTTCTCAAGCACGTTGAGGGCTGCAACATCAGGCCAAGCTTTCCCACAGTGTGTCTTTGATCATTGGGACATGATGTCCTCTGACCCATTGGAGGCTGGATCGCAAGCTGCACAACTTGTGGCGGATATTCGTAAGAGGAAGGGCTTGAAGGAACAGATGACTCCTCTCTCTGAGTATGAAGACAAGCTTTAA 2445 0.4642 MGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKNYKGERNGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDEGKMMERLWGENFFDPATKKWTSKNTGSATCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLQKLGVTMKSEEKDLMGKALMKRVMQTWLPASTALLEMMIFHLPSPSTAQKYRVENLYEGPLDDQYAAAIRACDPDGPLMLYVSKMIPASDKGRFFAFGRVFSGRVSTGLKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKRQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCTIEESGEHIVAGAGELHLEICLKDLQDDFMGGAEIIKSDPVVSFRETVLERSCRTVMSKSPNKHNRLYMEARPMEDGLAEAIDDGKIGPRDDPKVRSKILSEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALAEENMRAICFEVCDVVLHADAIHRGGGQIIPTARRVFYASQLTAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSSTLRAATSGQAFPQCVFDHWDMMSSDPLEAGSQAAQLVADIRKRKGLKEQMTPLSEYEDKL 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01701 814 SUPERFAMILY EF-G C-terminal domain-like 698 809 IPR035647 -
Vimu4g01701 814 Gene3D Translation factors 314 455 - -
Vimu4g01701 814 FunFam Translation elongation factor 2 694 814 - -
Vimu4g01701 814 FunFam Translation elongation factor 2 540 693 - -
Vimu4g01701 814 Gene3D Yeast translation eEF2 (G' domain) 193 297 - -
Vimu4g01701 814 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 2 813 - -
Vimu4g01701 814 SUPERFAMILY Ribosomal protein S5 domain 2-like 533 697 IPR020568 -
Vimu4g01701 814 FunFam Translation elongation factor 2 1 208 - -
Vimu4g01701 814 Gene3D - 541 693 IPR014721 -
Vimu4g01701 814 CDD eEF2_snRNP_like_C 698 776 - -
Vimu4g01701 814 Pfam Elongation Factor G, domain III 458 520 IPR041095 -
Vimu4g01701 814 Pfam Elongation factor Tu GTP binding domain 2 313 IPR000795 GO:0003924|GO:0005525
Vimu4g01701 814 Pfam Elongation factor Tu domain 2 365 438 IPR004161 GO:0005525
Vimu4g01701 814 CDD EF2_II 346 441 - -
Vimu4g01701 814 FunFam Translation elongation factor 2 314 455 - -
Vimu4g01701 814 SMART EFG_C_a 695 784 IPR000640 -
Vimu4g01701 814 Gene3D - 1 185 IPR027417 -
Vimu4g01701 814 PRINTS GTP-binding elongation factor signature 72 82 IPR000795 GO:0003924|GO:0005525
Vimu4g01701 814 PRINTS GTP-binding elongation factor signature 88 99 IPR000795 GO:0003924|GO:0005525
Vimu4g01701 814 PRINTS GTP-binding elongation factor signature 36 44 IPR000795 GO:0003924|GO:0005525
Vimu4g01701 814 PRINTS GTP-binding elongation factor signature 124 133 IPR000795 GO:0003924|GO:0005525
Vimu4g01701 814 Pfam Elongation factor G, domain IV 581 693 IPR005517 GO:0005525
Vimu4g01701 814 SUPERFAMILY Translation proteins 313 447 IPR009000 -
Vimu4g01701 814 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 29 44 IPR031157 -
Vimu4g01701 814 FunFam Translation elongation factor 2 457 534 - -
Vimu4g01701 814 CDD EF2_snRNP_III 458 530 - -
Vimu4g01701 814 NCBIfam small GTP-binding protein domain 2 147 IPR005225 GO:0005525
Vimu4g01701 814 Gene3D Elongation Factor G (Translational Gtpase), domain 3 457 534 - -
Vimu4g01701 814 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 315 IPR000795 GO:0003924|GO:0005525
Vimu4g01701 814 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 312 IPR027417 -
Vimu4g01701 814 SMART EFG_IV_2 576 693 IPR005517 GO:0005525
Vimu4g01701 814 Pfam Elongation factor G C-terminus 695 782 IPR000640 -
Vimu4g01701 814 CDD aeEF2_snRNP_like_IV 530 702 - -
Vimu4g01701 814 Gene3D - 694 814 - -
Vimu4g01701 814 SUPERFAMILY EF-G C-terminal domain-like 455 531 IPR035647 -
Vimu4g01701 814 FunFam Elongation factor 2 193 297 - -
Vimu4g01701 814 CDD EF2 2 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01701 Vimu-Chr4 18501608 18505392 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01701 2 814 Eukaryotic Initiation Factors Gene Family AT1G56070 93.112 0.0 1595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01701 K03234 - gmx:100804251 1607.42