Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01693 ATGGGTGTGAACGAAAATTTCAACAAGGATGATCATCATGAGTGTGTGGATGACGATGAAATTCCACTTCCTGGATTTCGATTCCATCCCACAGATGAAGAGCTTGTTAGTTTCTATCTACGAAGGAAGCTTGACAAGAAACCCATCAGCATCGACCTCATCAAACAGATTGATATTTACAAATACGATCCTTGGGATCTTCCAAAGAGCAATGGCAGTGGAGGAGAGAAGGAGGGGTACTTCTTCTGCAGAAGAGGGAGGAAGTATAGGAATAGCATAAGGCCTAATAGAGTGACTGGGTCTGGCTTCTGGAAAGCAACCGGCATAGACAAACCAGTCTACTCACAAGGCGGAGAAGGCAATGACTGCATTGGACTCAAAAAAACACTTGTCTATTACCGCGGCAGTGCAGGCAAAGGCACCAAAACCGATTGGATGATGCACGAGTTTCGACTTCCTTCTAACACAGACACCAACACAATCCTTCCAAACTCCAGAAATTATGTCGATGTTCCCCAAGAAGCTGAAATTTGGACGTTGTGTAGAATATTCAAGAGAAACGTGTCACAGAGGAAGCAGGTGCCGGACTTGAAACAAGTATCAGCCAAGCGCCATGCATTTTATGAGAAGAGCTCGAGAGCGAGCAATATGGAGTTTGACAGTGGAAACCAAGAATCGTATATAAACTTTGGTGGGCACTATCAGAACGAACAGAAAGCCGTGATCAACTATACAAACTGTGATAAAAGGAATCAGTTTAGTGTGGTGAGTCAGTTGTGTTCTACAGTGGCACAGCAGCAACCTCAACTAACTGCACCATCTTCTAACCTTTGGAGTAACCCACCTGGGAACGATTTCTTCACATTCGATAACTGGGATGAACTTGGATCGGTAGTGAAGTTTGCTGTTGATTCGCCTAGCTTGTAG 927 0.4444 MGVNENFNKDDHHECVDDDEIPLPGFRFHPTDEELVSFYLRRKLDKKPISIDLIKQIDIYKYDPWDLPKSNGSGGEKEGYFFCRRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSQGGEGNDCIGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSNTDTNTILPNSRNYVDVPQEAEIWTLCRIFKRNVSQRKQVPDLKQVSAKRHAFYEKSSRASNMEFDSGNQESYINFGGHYQNEQKAVINYTNCDKRNQFSVVSQLCSTVAQQQPQLTAPSSNLWSNPPGNDFFTFDNWDELGSVVKFAVDSPSL 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01693 308 Gene3D NAC domain 31 190 IPR036093 GO:0003677|GO:0006355
Vimu4g01693 308 ProSiteProfiles NAC domain profile. 22 186 IPR003441 GO:0003677|GO:0006355
Vimu4g01693 308 SUPERFAMILY NAC domain 23 186 IPR036093 GO:0003677|GO:0006355
Vimu4g01693 308 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 23 257 - -
Vimu4g01693 308 Pfam No apical meristem (NAM) protein 24 152 IPR003441 GO:0003677|GO:0006355
Vimu4g01693 308 FunFam NAC domain-containing protein 35 31 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01693 Vimu-Chr4 18429622 18431210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01693 19 195 NAC Transcription Factor Family AT5G39820 58.421 5.25e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu4g01693 NAM 7.1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01693 - - gmx:100790471 539.65