Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01689 ATGATGGCAGTGGACTATAGTTTTCACTTCCTCAATGGGGTTTACGTGATGATGTTGTTTTGCGTTGGCATTGTACTTGTGAATTCGGTTAATGAAGAGGGGTTAAGTCTCTTGATGTTCAAAGCTTCCCTTCATGACCCAAACAACAATCTCTACAACTGGAATTCTTCTGATTTGACTCCTTGCAATTGGACTGGTGTATATTGCACGGGTTCAGTGGTAACTTGTGTAAAACTTTACCACCTTAATCTATCTGGCACTTTGGCTCCCACCATCTGCAATCTTCCAAAGCTGCTCGAGTTGAATTTGTCAAAAAATTTCATCTCTGGCCCCATTCCTGATGGTTTTGTTGACTGTGGTAGTTTGGAGGTTTTGGACCTTTGCACAAATAGGCTTCACGGACCCCTTCTGACCCCTATTTGGAAAATCACAACACTTAAAAAGCTCTATCTGTGTGAAAACTATATGTATGATGAAGTGCTGGAGGAGCTTGGGAATTTGGTGTCACTTGAGGAGCTAGTCATCTATAGCAATAATTTAACTGGGATAATTCCCTCTTCAATAAGAAAGTTGAAGCAGCTTAGAGTTATAAGGGCCGGTCTGAATGCCCTCTCAGGACCAATACCTACTGAAATCAGTGAATGTGAGAGCTTGGAGATATTGGGGTTGGCACAGAATCAGCTAGAAGGTTCTATTCCAAGGGAGCTTCAAAAGCTTCAGAACCTCACTACTATACTTCTGTGGCAAAATTCTTTCTCTGGAGAGATTCCTCCTGAGATTGGAAACATTAGTAGCTTGGAATTGCTTGCTTTGCACCAAAATTTACTAACTGGTGGTGTCCCCAGGGAACTGGGAAAGCTGTCCCAGTTGAAGAGGTTGTACATGTACACCAACATGCTGAACGGAACAATTCCACCTGAGCTAGGAAACTGCACAAATGCTATTGAGATAGACCTATCTGAAAACCATTTGATTGGGATCATTCCCAAGGAGCTGGGCCTAATCTCTAATCTTAGCTTGCTTCATCTGTTTGAAAACAACCTGCAGGGTCATATTCCAAGGGAGCTCGGTCAGTTAAGAGTCCTAAGAAATTTAGACCTGTCACTAAATAACTTGACTGGTACAATTCCACTTGAATTTGAAAACCTTACACATATGGAAGATTTGCAGCTATTTGACAATCAACTTGAAGGTGTGATTCCTCCTCGGCTTGGAGCTATAAGGAACCTTACTATTCTTGATATATCTGCAAACAACCTTTTTGGTATGATACCTCTTCATCTTTGTGGATATCAGAAGCTACAGTTCCTGAGCCTTGGGTCAAATAGGTTGTTTGGAAATATTCCGTATAGCCTGAAAACGTGCAAATCTCTTGTGCAGCTTATGCTGGGGGACAACCAGCTGACAGGAAGCCTGCCTGTTGAATTGTATGAACTTCACAATCTCACTGCACTTGAACTCTATCAGAATCGATTTTCGGGGATGATAAACCCCGGGATAGGTCAACTCAGGAATCTAGAGAGGCTTCTCTTGTCAGCTAACTACTTCGAAGGCTATCTACCGCCTGAGATTGGAAGTTTGAAACAACTTGTCACATTCAATGTTTCTTCTAACCGTTTCAGTGGAAGCATTCCTAAAGATTTGGGAAACTGTGTTAGACTGCAGAGGCTTGATCTTAGCAGGAACCACTTCACTGGTATGCTTCCAAATGAAATTGGAAGCCTGGTGAACTTGGAGCTCTTGAAAGTTTCTGATAACGTCCTCTCAGGAGAAATACCAGGCACTTTGGGGAATCTTATTCGACTCACAGACCTGGAACTAGGTGGCAACCAATTTTCAGGAAGCATCTCTTTTCATTTGGGAAGACTTGCGGCCCTTCAGATTGCTCTTAACCTGAGCCACAACAAACTTTCTGGGTCAATTCCTGATAGTCTTGGGAACTTGCAAATGCTAGAGTCCCTTTATCTCAATGACAATCAACTTATTGGTGAGATTCCAACATCAATTGGTGACCTTCTCAGTCTTGTAGTGTGCAATGTATCTAACAACAAGCTAGTAGGAACTGTTCCAGACACCACTACATTTAGAAAGATGGATTTCACGAACTTTGCTGGGAACAACGGCTTGTGCCGTGTCGGTACCAGTCATTGCCATCCATCAATATCTTCCTCTCATGCTGCAAAGCAAAACTGGATCAGAAATGGTTCCTCGAGGGAAAAAATAGTGAGCATTGTTTCTGGGGTTGTAGGACTAGTTTCTCTTATTTTCATAGTGTGGATATGTTTGGCTATGAGGCGACGTGGCCATGATGCTTTTGTCTCACTTGAAGGGCAAACTAACACTCATGTCTTGGATAATTACTACTTTCCTAAAGAAGGGTTTACATACCAGGATCTCTTGGAAGCCACTGGAAATTTTTCAGAAAATGCAGTTCTAGGAAGAGGAGCTTGTGGCACTGTGTACAAGGCTATTATGAGTGATGGTGAAGTGATTGCTGTAAAAAAGCTGAATTCGCGAGGAGAAGGAGCAAATAATGTTGACAGAAGCTTCCTTGCCGAGATTTCAACTCTTGGAAAGATCAGGCACAGGAACATTGTGAAGCTGTATGGATTTTGCTACCATGAGGATTCTAATCTTCTTCTATATGAATACATGGAAAATGGAAGCCTTGGTGAACAACTTCATTCAAGTGAAATCACCTGTGCACTGGATTGGAGTAGTCGATATAAAATTGCTCTTGGAGCAGCAGAAGGCTTATGCTATCTTCATTATGATTGCAAACCTCAAATTATTCACCGTGACATAAAGTCCAACAACATATTACTTGATGAGGTCTTTCAGGCTCACGTTGGAGACTTTGGCTTGGCAAAGTTGATTGATTTTTCTTTCTCAAAATCCATGTCTGCTGTGGCTGGTTCCTATGGCTACATTGCCCCAGAATATGCTTACACGATGAAGGTGACTGAGAAGTGTGACATCTATAGCTTTGGGGTAGTTTTGCTTGAACTAGTTACTGGGAGGTCACCTGTTCAACCTTTGGAACAAGGTGGTGACCTAGTCACCTGTGTGAGAAGAGCAATTCAAGCATCAGTACCAACGTCTGAATTATTTGACAAGAGATTGAATCTTAGTGCTCCAAAGACAGTTGAAGAAATGTCTCTTATTCTCAAAATTGCCCTGTTCTGTACCAGCACGTCTCCACTTAATAGGCCTACTATGAGAGAGGTCATTGCAATGTTGATTGATGCCAGGGAATATGTCAGCAACTCACCAACCTCTCCTACATCAGAGTCTCCATTGGATGAGGATGATGGCATTTCTTCCAAAGGTTAG 3333 0.4221 MMAVDYSFHFLNGVYVMMLFCVGIVLVNSVNEEGLSLLMFKASLHDPNNNLYNWNSSDLTPCNWTGVYCTGSVVTCVKLYHLNLSGTLAPTICNLPKLLELNLSKNFISGPIPDGFVDCGSLEVLDLCTNRLHGPLLTPIWKITTLKKLYLCENYMYDEVLEELGNLVSLEELVIYSNNLTGIIPSSIRKLKQLRVIRAGLNALSGPIPTEISECESLEILGLAQNQLEGSIPRELQKLQNLTTILLWQNSFSGEIPPEIGNISSLELLALHQNLLTGGVPRELGKLSQLKRLYMYTNMLNGTIPPELGNCTNAIEIDLSENHLIGIIPKELGLISNLSLLHLFENNLQGHIPRELGQLRVLRNLDLSLNNLTGTIPLEFENLTHMEDLQLFDNQLEGVIPPRLGAIRNLTILDISANNLFGMIPLHLCGYQKLQFLSLGSNRLFGNIPYSLKTCKSLVQLMLGDNQLTGSLPVELYELHNLTALELYQNRFSGMINPGIGQLRNLERLLLSANYFEGYLPPEIGSLKQLVTFNVSSNRFSGSIPKDLGNCVRLQRLDLSRNHFTGMLPNEIGSLVNLELLKVSDNVLSGEIPGTLGNLIRLTDLELGGNQFSGSISFHLGRLAALQIALNLSHNKLSGSIPDSLGNLQMLESLYLNDNQLIGEIPTSIGDLLSLVVCNVSNNKLVGTVPDTTTFRKMDFTNFAGNNGLCRVGTSHCHPSISSSHAAKQNWIRNGSSREKIVSIVSGVVGLVSLIFIVWICLAMRRRGHDAFVSLEGQTNTHVLDNYYFPKEGFTYQDLLEATGNFSENAVLGRGACGTVYKAIMSDGEVIAVKKLNSRGEGANNVDRSFLAEISTLGKIRHRNIVKLYGFCYHEDSNLLLYEYMENGSLGEQLHSSEITCALDWSSRYKIALGAAEGLCYLHYDCKPQIIHRDIKSNNILLDEVFQAHVGDFGLAKLIDFSFSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELVTGRSPVQPLEQGGDLVTCVRRAIQASVPTSELFDKRLNLSAPKTVEEMSLILKIALFCTSTSPLNRPTMREVIAMLIDAREYVSNSPTSPTSESPLDEDDGISSKG 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01689 1110 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 772 884 - -
Vimu4g01689 1110 SUPERFAMILY Protein kinase-like (PK-like) 781 1080 IPR011009 -
Vimu4g01689 1110 Pfam Protein kinase domain 807 1077 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01689 1110 Gene3D Ribonuclease Inhibitor 335 404 IPR032675 -
Vimu4g01689 1110 Gene3D Ribonuclease Inhibitor 34 141 IPR032675 -
Vimu4g01689 1110 Gene3D Ribonuclease Inhibitor 233 332 IPR032675 -
Vimu4g01689 1110 Gene3D Ribonuclease Inhibitor 405 725 IPR032675 -
Vimu4g01689 1110 MobiDBLite consensus disorder prediction 1088 1110 - -
Vimu4g01689 1110 Gene3D Phosphorylase Kinase; domain 1 772 884 - -
Vimu4g01689 1110 Pfam Leucine Rich Repeat 553 575 IPR001611 GO:0005515
Vimu4g01689 1110 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 475 1081 - -
Vimu4g01689 1110 Gene3D Ribonuclease Inhibitor 142 232 IPR032675 -
Vimu4g01689 1110 FunFam Leucine-rich repeat receptor-like kinase 33 149 - -
Vimu4g01689 1110 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 885 1097 - -
Vimu4g01689 1110 SMART LRR_typ_2 287 311 IPR003591 -
Vimu4g01689 1110 SMART LRR_typ_2 551 574 IPR003591 -
Vimu4g01689 1110 SMART LRR_typ_2 383 407 IPR003591 -
Vimu4g01689 1110 SMART LRR_typ_2 575 599 IPR003591 -
Vimu4g01689 1110 SMART LRR_typ_2 359 382 IPR003591 -
Vimu4g01689 1110 SMART LRR_typ_2 167 190 IPR003591 -
Vimu4g01689 1110 SMART LRR_typ_2 95 119 IPR003591 -
Vimu4g01689 1110 SMART LRR_typ_2 648 672 IPR003591 -
Vimu4g01689 1110 SMART LRR_typ_2 503 527 IPR003591 -
Vimu4g01689 1110 ProSiteProfiles Protein kinase domain profile. 806 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01689 1110 SUPERFAMILY RNI-like 366 687 - -
Vimu4g01689 1110 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Vimu4g01689 1110 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 281 383 - -
Vimu4g01689 1110 Gene3D Transferase(Phosphotransferase) domain 1 885 1097 - -
Vimu4g01689 1110 SMART serkin_6 806 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01689 1110 SUPERFAMILY L domain-like 33 312 - -
Vimu4g01689 1110 ProSitePatterns Serine/Threonine protein kinases active-site signature. 930 942 IPR008271 GO:0004672|GO:0006468
Vimu4g01689 1110 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 411 721 - -
Vimu4g01689 1110 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 180 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01689 Vimu-Chr4 18355868 18359562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01689 52 1084 Receptor kinase-like Gene Family AT1G73080 37.291 0.0 615
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu4g01689 Pkinase 2.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01689 - - gmx:100818311 2018.05