LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu4g01657	ATGGAAGCAGCATGGGCAACAACAGTGACAATCATAGTGATACTTGTTCTGATATGGGCATGGAAGATTTTGAACTGGTTATGGTTCAAACCAAAGAGGCTTGAAAAGCTGCTAAGAGAGCAAGGCTTTCAAGGCAATCCGTACAAGCTTTTTGTTGGAGACAGCAAGGAGTTTCTCAAAATGAGAAAGGAAGCTTTGTCCAAACCCATGAATCTCTGTGATGACATAGCGCCACGTGTTTCTTCCTACATGCATCATATTGTCAACACACATGGTAAGAACTCTTTTATCTGGTTAGGACCAACTCCAAGGGTGACCATCTTAGATCCTGGGCAAATCAAAGATGTATTTAACAATATGTCTGACTTCCCAAAGCCTCACATAAATCCACTCTTCAAGTTACTAGCAACCGGCCTTGCCGACCATGATGGAGAAAAGTGGAGCAAGCACAGAAGTTTGAGTGACGTGATTCTAAATCCGAGTGATTTCCTTATTGCACCACAGACTATGTTACCATTATTCTTCGAAAGTTGCAATGATTTGGTTAGCAAATGGGAAGGAATGTTGTCATCAGACGGATCATGTGAAATAGATGCGTGGCCTTTCCTTCAGAATCTGGCTAGTGATGTTATTGCTCGCTCAGCATTTGGAAGTAGCTTTGAAGAAGGGAGAAGAATATTTCAACTTCAAAGAGAGCAAGCTAAACTTGTAATGCAACTTATATTAAAAATTCAAATCCCAGGATGGAGGTTTTTGCCTACTAAAAGCCATAGGAGAATGAAGGAAATTGACAGAGATATAAAAGCTTCGCTCAAGGATATGATTTACAAGAGGGAGAAAGCACTAAAGGCTGGTGAAGCCACTAATAATGACCTGTTGGGTATACTTTTGGAGTCCAATCACAAGGAGATTCAAGAACATGGAAACGGAGATAATAAGAATGTTGGAATGAGTCTTGAAGACGTAATCCAGGAATGCAAGCTATTTTACTTTGCAGGGCAAGAAACCACTTCAGTTTTGCTGGTTTGGACAATGGTGTTATTGAGTAGGTACCCTAATTGGCAACAACGTGCAAGGGAGGAAGTCTTGCAAGTCTTTGGCAATGAAAAGCCAAGTTTTGATGGTTTAAATCGGTTAAAGATTGTCACTATGATTTTGAATGAGGTTCTTAGATTATACCCACCAGTAATTGGATTGGGTCGAGTTGTTAAAAGAGATCTGAAACTTGGAAAAGTAACATTACCTGCTGGAGTGCATGTTTTCCTCCCAACAGTTTTGGTTCACCACGACAGTGAATTTTGGGGTGAAGATGCTAAGCAGTTCAATCCAGAGAGATTTTCTGAGGGAGTTCTGAAAGCAACAAATGGTAAAGTTTCATTCTTTCCATTTGGAGGGGGTCCTAGAATTTGCATTGGACAAAACTTCTCCTTACTTGAAGCAAAGATGGCTTTGTCAATGATTTTACAGCATTTCTCATTTGAACTTTCTCCAGCATATACTCATGCTCCAACTATGTCAATCACTCTTCAGCCGCAAAAGACAGATATGGAAGCAGCATGTGCAACAGCTCTGACTCTCATAGTGATACTTGTTCTGATATGCGCATGGAGGATTCTGAACTGGTTATGGTTCAAACCAAAGAGACTTGAAAAGCTGCTAAGAGAGCAAGGCTTTCAAGGCAATCCATACAGGCTTTTGTTTGGAGATAGCAAGGACTTGCTCAAAACGAGAAAGAAAGCCTTATCCAAACCTATGAATCTCTCTGATAACATAATTCCACGTGTGTCTTCCTACACCCATCATACTGTCAACACACATGGTAAAAACTCTTTTATCTGGTTAGGACCAACTCCAAGGGTGACCATCTTAGATCCTGGGCAAATCAAAGATGTACTTAACAATATGTCTGACTTTCCAAAGCCTGACACAAATCCACTTGTCAAGTTACTAGCAACTGGCCTTGCCGATCATGATGGAGAAAAGTGGAGCAAGCACAGAAGGTTAATCAACCCTGCTTTCAATTTAGAAAAATTAAAGAGTGATTTCCTTATTGCACCACAGACTATGTTACCATTATTCTTCGAAAGTTGCAATGATCTGGTTAGCAAATGGGAAGGAATGTTGTCTTCAGACGGATCATGTGAAATAGATGCATGGCCTTTCCTTCAGAATCTGGCTAGTGATGTTATCGCTCGCTCAGCATTTGGAAGTAGCTTTGAAGAAGGAAGAAGAATATTTCAACTTCAAAGAGAGCAAGCTAAACTTGCATTGCAACTTGTATTAAAAATTCAAATCCCTGGATGGAGGTTTTTGCCTACTAAAAGCCATAGGAGAATGAAGGAAATTGACAGAGATATAAAAGCATCACTCAAGGATATGATTTACAAGAGGGAGAAAGCACTAAAGGCTGGTGAAGCCACTAATAATGACCTGTTGGGTATACTTTTGGAGTCCAATCACAAGGAAATTCAAGAACATGGAAATGGAGAAAATAAGAATGTTGGAATGAGTCTTGAAGACGTAATCCAGGAATGCAAGCTATTTTACTTTGCAGGGCAAGAAACCACTTCAGTTTTGCTGGTTTGGACAATGGTGTTATTGAGTAGATTATACCCACCGGTACTTGGGTTGACACGATTTGTTAAAAGAGATATGAAACTTGGAAACATAACATTGCCTGCTGGAGTGCAGGTTTTACTTCCGACAATTTTGGTTCACCATGGATGTGAATTCTGGGGTGAAGATGCTAAGCAGTTTAATCCTGAGAGATTTTCTGAAGGAGTTCTAAAGGCAACAAATGGTAGAGTTTCATTTTTCCCATTTGGATGGGGTCCTAGAATATGCATTGGACAAAACTTCTCCTTGTTGGAAGCAAAGATGGCTTTGTCAATGATTTTACAACATTTCTCATTTGAACTTTCTCCAGCATATGCTCATGCTCCAGCTATGTTAATCACTCTTCATCCACAGTATGGTGCTCATATCATTCTCCATAAAGTGAAATCTTAA	3009	0.3995	MEAAWATTVTIIVILVLIWAWKILNWLWFKPKRLEKLLREQGFQGNPYKLFVGDSKEFLKMRKEALSKPMNLCDDIAPRVSSYMHHIVNTHGKNSFIWLGPTPRVTILDPGQIKDVFNNMSDFPKPHINPLFKLLATGLADHDGEKWSKHRSLSDVILNPSDFLIAPQTMLPLFFESCNDLVSKWEGMLSSDGSCEIDAWPFLQNLASDVIARSAFGSSFEEGRRIFQLQREQAKLVMQLILKIQIPGWRFLPTKSHRRMKEIDRDIKASLKDMIYKREKALKAGEATNNDLLGILLESNHKEIQEHGNGDNKNVGMSLEDVIQECKLFYFAGQETTSVLLVWTMVLLSRYPNWQQRAREEVLQVFGNEKPSFDGLNRLKIVTMILNEVLRLYPPVIGLGRVVKRDLKLGKVTLPAGVHVFLPTVLVHHDSEFWGEDAKQFNPERFSEGVLKATNGKVSFFPFGGGPRICIGQNFSLLEAKMALSMILQHFSFELSPAYTHAPTMSITLQPQKTDMEAACATALTLIVILVLICAWRILNWLWFKPKRLEKLLREQGFQGNPYRLLFGDSKDLLKTRKKALSKPMNLSDNIIPRVSSYTHHTVNTHGKNSFIWLGPTPRVTILDPGQIKDVLNNMSDFPKPDTNPLVKLLATGLADHDGEKWSKHRRLINPAFNLEKLKSDFLIAPQTMLPLFFESCNDLVSKWEGMLSSDGSCEIDAWPFLQNLASDVIARSAFGSSFEEGRRIFQLQREQAKLALQLVLKIQIPGWRFLPTKSHRRMKEIDRDIKASLKDMIYKREKALKAGEATNNDLLGILLESNHKEIQEHGNGENKNVGMSLEDVIQECKLFYFAGQETTSVLLVWTMVLLSRLYPPVLGLTRFVKRDMKLGNITLPAGVQVLLPTILVHHGCEFWGEDAKQFNPERFSEGVLKATNGRVSFFPFGWGPRICIGQNFSLLEAKMALSMILQHFSFELSPAYAHAPAMLITLHPQYGAHIILHKVKS	1002

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu4g01657	1002	Pfam	Cytochrome P450	869	976	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vimu4g01657	1002	Pfam	Cytochrome P450	598	868	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vimu4g01657	1002	Pfam	Cytochrome P450	81	514	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vimu4g01657	1002	SUPERFAMILY	Cytochrome P450	80	512	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vimu4g01657	1002	Gene3D	Cytochrome P450	869	1001	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vimu4g01657	1002	SUPERFAMILY	Cytochrome P450	596	998	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vimu4g01657	1002	FunFam	Cytochrome P450 734A1	28	516	-	-
	Vimu4g01657	1002	ProSitePatterns	Cytochrome P450 cysteine heme-iron ligand signature.	941	950	IPR017972	GO:0005506\|GO:0016705
	Vimu4g01657	1002	Gene3D	Cytochrome P450	71	525	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Vimu4g01657	1002	CDD	CYP72	82	512	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu4g01657	Vimu-Chr4	17909024	17920969	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu4g01657	6	512	Cytochrome P450	AT3G14690	54.921	0.0	587

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu4g01657	-		K23809	cmax:111477005	1061.6

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