LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu4g01656	TTGCGGGTTGGTAGTAGGCTCAGGGAGTTTGTTTTCCTTATTGACCCCAGAGAATGGTGTAATAACAAGCTTCGAAAAGAAGAGACAGAGAGAAAGAGAAAGATGAGGTTTTTGGGTTACATAGCTCAATGGAGAAGCGCAGCGAAGGAAGCGTTGGACCGCACAGGCATCACTGTGAATTTCCTGTGTTGGCTTCACTTCACCAGCAACTACCTCTGTTCCCCTGTTCACGCGTATGGGGTTAGCATGCTCCCCACTCTCAACGTCACCGGCGACATCCTCCTCGCCGACCACCTCTCCCCGCTGCTCGGGAACGTCGGCCACGGCGACTTAGTTCTCGTTCGGTCCCCTCTCAACCCTAAGATCAGGTTGACGAAGCGCGTCGTGGCCGTGGAAGGGGACACCGTCACTTACTTCGACCCGTTGCACTCTGAAGCTTCTCAAGTTGCAGTGGTGCCAAAGGGGCATGTTTGGATTCAAGGGGATAACATTTATGCCTCCCGTGACTCACGCCATTTTGGTCCTGTCCCATATGGTCTCATTGAAGGAAAAGTGTTTTTCAGGAGTGAGGTAGAGTTGTATTGA	585	0.5197	MRVGSRLREFVFLIDPREWCNNKLRKEETERKRKMRFLGYIAQWRSAAKEALDRTGITVNFLCWLHFTSNYLCSPVHAYGVSMLPTLNVTGDILLADHLSPLLGNVGHGDLVLVRSPLNPKIRLTKRVVAVEGDTVTYFDPLHSEASQVAVVPKGHVWIQGDNIYASRDSRHFGPVPYGLIEGKVFFRSEVELY	194

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu4g01656	194	FunFam	Inner membrane protease subunit 1	69	193	-	-
	Vimu4g01656	194	SUPERFAMILY	LexA/Signal peptidase	71	188	IPR036286	-
	Vimu4g01656	194	Gene3D	Umud Fragment, subunit A	69	191	-	-
	Vimu4g01656	194	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	43	188	-	-
	Vimu4g01656	194	CDD	S26_SPase_I	74	185	IPR019533	GO:0004252\|GO:0006465
	Vimu4g01656	194	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	152	171	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vimu4g01656	194	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	124	136	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vimu4g01656	194	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	71	87	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Vimu4g01656	194	Pfam	Signal peptidase, peptidase S26	148	188	IPR019533	GO:0004252\|GO:0006465
	Vimu4g01656	194	Pfam	Signal peptidase, peptidase S26	61	138	IPR019533	GO:0004252\|GO:0006465

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu4g01656	Vimu-Chr4	17900950	17903522	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu4g01656	83	188	MADS-box Gene Family	AT1G29960	49.533	2.21e-31	108

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu4g01656	K09647		-	cave:132173278	235.728