Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01639 ATGCCGTTAATTCTGCTAACGGCAGACCTGTCCAGCTGTCTAATATCTGATGACTTCCTCTGTTTGAAAGTTGCTCTTGATGCTGCCAAAGGGCTTGCCTTTCTACACAGTGCTGAAACAAAAGTGATATATACAGATTTTAAGACTTCAAATATATTGCTGGATTCGAATTACAATGCAAAACTTTCTGATTTTGGGCTGGCAAAGGATGGACCAACGGGTGACAAAAGCCATGTCTCCACCAGGGTAATGGGAACCTACAGATATGCAGCTCCTGAATATCTACCCACAGAAATGTTATCTGGAAAGAAGGCAGTTGACAAGAATAGACCATCTGGACAACACAATTTGGTGGAATGGGCTAAACCATACCTAGCAAACAAACGTAAAATATTTCGTGTGTTGGACACACGACTTGAAGGACAATATTCAACGAATGATGCCTATAAAGTGGCCAACCTTGCCTTGCGGTGCCTGTCAATAGATTCCAAGTTCAGGCCAAACATGGATGAAGTAGTCAGAACATTAGAAACAGAAAATCTCAAGCGCGTTGATGAAGGTGGATTGAAGAACTCTGAAATCATTGAGAATTGTGTTTTTTCTCAGATAAGGAAACTCTTGTCTGTGGAGTTGTTGAAGTGCTACTGCGGTGACAAAGGAATAGTTGGTTCATACTTGGTGCATTCAAGGAAGTGCTCAGAAAAAAAAGTCATCCTTCATGAAATATTTGAAGGAAGTGTTTCATCCTTTGTGAAGACTCAAAGGAGGTGCAGTGGAAGTAGGCAACAACCCAAGTTCGGCTTTAGGTTGAAATGCCATAAGAGATCCAAAAACAAATGCAATGAAGCGGAGAGAAAAGGCGAAGGAAGACGATCAAAGTGCTGTTGGCGGAAACAATTGACTTTTCACATACCTGCCCAGACTATAGACGTCGGGTATGGGGGGAGCGGACGTCCAGATGGCGGAAAAATTAAATTTTCACCAACCTGTCAGACTATAGATGTCAGACTTGTCGTTCTTGTCGCTACACAGTCATCCGCCGCTAGACATAATCCTCCACCTCTTCAGTACCATGTGGTCGCATCTCCTACTTCTTCCTTTGTCATTGCAGGTACCTCCCCCCTCCGGTCAAAGCTTGAAGATCACCGAACGACCAAGATTACAGGAGAGCGAGCGGTCAAGATCTGGGAAAAGCGAGCGATCCGCTCAATCCAAACATCAAAAAGTGATAAAGCCGCGTCCGCTAGGTTAGTGTCTCGGTCCCACAAAATACCAACCGAAACATTTTGGCGCCCACCGTGGGGCCAGGGGCATCCCATTGAAAGTCGCAAGAAACCAAGACTATTGCTTCTACCTACTAACCAATTTTTAAGTGTGGTAATCTTCAAAAGTGAAGCTGCACCGCGTCGCATCGCTGTCAGGATTCTCCTCAGTCATCCGTTCAGCCCCTTCAGTCTCAACTGCTCGACCTTCCATGGCCTCAACCCATCATTCTCGGCCATCGGGAAGTTCCCTCATGAACTCCTATGCTTAAGTCCGAGCGAGCTCGGCCATTGGGAAATTCCCTACTCGGCCATTAGGAAATTCCCTCGTGAACTCCTATGCTCAAGTCCGAGCAAGCTCGGCCATCAGGAAGTTCCTCTCCTCACAGTCATACAACCATTCGACCTTACATATACTCGACCATTCGGCCTCATAGACATACATTCATTCAGCTTTACAAGTTCTCGGCCGTTCAGCCTCACAGGTGCTCAGCCATTCGGCCTCACAGTCATACAGCCATTCGGCCTTACAGGTACTCGGCTATTCAGCCTCACAGTCATACAACCATTCGGCTTTACAGGTACTCAATCATTCAGCCTCACAGGTGCTTGGTCATTCGGGCTCACAGTCATACAGCCATTCGGCCTCACATGCATTCGGCCATTCGACCTCACAGGCATTCAACCATTCAACTTAACAGAATCTCGGCCATTCGGCCTCCAAGGTATCTCTTTCACCGTTCGGTTTAGAGATGAGCAACGCCTAAAAGCACGCTCTCCAGTACCTCCCCCCTCCGGTCAAAGCTTGAAGATCACCGAACGACCAAGATTACAGGAGAGCGAGCGGTCAAGATCTGGGAAAAGCGAGCGATCCGCTCAATCCAAATATCAAAAAGTGATAAAGCCGCGTCCGCTAGGTTAG 2184 0.4689 MPLILLTADLSSCLISDDFLCLKVALDAAKGLAFLHSAETKVIYTDFKTSNILLDSNYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYRYAAPEYLPTEMLSGKKAVDKNRPSGQHNLVEWAKPYLANKRKIFRVLDTRLEGQYSTNDAYKVANLALRCLSIDSKFRPNMDEVVRTLETENLKRVDEGGLKNSEIIENCVFSQIRKLLSVELLKCYCGDKGIVGSYLVHSRKCSEKKVILHEIFEGSVSSFVKTQRRCSGSRQQPKFGFRLKCHKRSKNKCNEAERKGEGRRSKCCWRKQLTFHIPAQTIDVGYGGSGRPDGGKIKFSPTCQTIDVRLVVLVATQSSAARHNPPPLQYHVVASPTSSFVIAGTSPLRSKLEDHRTTKITGERAVKIWEKRAIRSIQTSKSDKAASARLVSRSHKIPTETFWRPPWGQGHPIESRKKPRLLLLPTNQFLSVVIFKSEAAPRRIAVRILLSHPFSPFSLNCSTFHGLNPSFSAIGKFPHELLCLSPSELGHWEIPYSAIRKFPRELLCSSPSKLGHQEVPLLTVIQPFDLTYTRPFGLIDIHSFSFTSSRPFSLTGAQPFGLTVIQPFGLTGTRLFSLTVIQPFGFTGTQSFSLTGAWSFGLTVIQPFGLTCIRPFDLTGIQPFNLTESRPFGLQGISFTVRFRDEQRLKARSPVPPPSGQSLKITERPRLQESERSRSGKSERSAQSKYQKVIKPRPLG 727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01639 727 Gene3D Transferase(Phosphotransferase) domain 1 17 194 - -
Vimu4g01639 727 PANTHER OS01G0588500 PROTEIN-RELATED 22 178 - -
Vimu4g01639 727 SMART serkin_6 5 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01639 727 ProSitePatterns Serine/Threonine protein kinases active-site signature. 42 54 IPR008271 GO:0004672|GO:0006468
Vimu4g01639 727 Pfam Protein kinase domain 23 100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01639 727 SUPERFAMILY Protein kinase-like (PK-like) 18 174 IPR011009 -
Vimu4g01639 727 MobiDBLite consensus disorder prediction 695 717 - -
Vimu4g01639 727 MobiDBLite consensus disorder prediction 676 727 - -
Vimu4g01639 727 ProSiteProfiles Protein kinase domain profile. 1 181 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01639 Vimu-Chr4 17706448 17717155 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01639 22 186 Receptor kinase-like Gene Family AT4G02010 45.902 1.57e-43 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu4g01639 Pkinase 1.5e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01639 - - gmx:100788856 278.87