Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01624 ATGGCTCACGGCTCAAGCGCTGACGTTTCTTCCCTTGGTGGGTTTCCTCCATGGCTCAGGCTATGGCGTCCTAGGCTAAAGCTGCTTGAGATGCAAGCGGCTCTCTGCAAATTGATTGAGCTGGTGATGATTTCATCACGTGTCGAAGGAAGGGCATTGTGTTGCTGGAAAGGAAAAATGCTTGGAGGGCACAACACCTACGGAATGGCAAGAAAGGCTCTGAAAGGGCAAGATAACTTTTGGAGAGGGTGGATGTTGAAGAACAAAAGGTGTCTAGAAGGCAAGCGCGTTCAATTCAAGCATCGTCTTGTTCCACTGTCCATTTGTCTTTCTCTTCATTCACGAGCTGTCACTGAGTTCACCTACAAATTTCAAACTCTCACAGATAAGTTTAAATTGTTTCTTGTTTTGAATATTATTATTATTATTATTATTATTATTATTTTGGAAATTGCGATCGGATTTGGAGGGAGATGGCGGCGCCGAATAGAATCGAACGCGCTCACCAGATGGTTCTACACGGAGGCAATCGCCATGGCTAAGACTAACCCTCAGAAGATCGCTTTACATAGCAATCGAGCCGCGTGCTTTCTGAAGCTTCACGATTTCAAAAAGGCAGCAGAAGAGTGTACCTCGGTGCTTGAGCTTGATCACAAGCACAGTGGGGCTTTGATGCTACGGGCTCAAACGCTTGTCACCCTGAAGGAGTATCATTCAGCTCTTTTTGATGTCAGCAGACTGTTAGAGTTGAATCCATCTTCAGAGGTTTATCAAAATCTTCAAGCTCGCTTGAAGACACAGTTGTCACTTGCTCCAATACCAGAATCAGAAGAGGAGTTTGAAGAACAGGAAGACGAGGAGCCTGAAGTGATAATTGAAGAGGAGAATGAAAGAGAAGAGATGGGAGACAAATATTCTTCGATTTCTAATATTATGACAGAACAGAAGGATGAACTCGGTAAAGGCATTGTTATTACCGAATGTGCTGCTCATGAAGCAGATCCCAAGTTTTCAATGAAGCAAGGGGGAAACCAAAACTATGAATCTAAGAAGTTCATAGCAGATGCCATAGCTCATAAAGCACCAAGCAGGGAATCCAATGAGGAACATTCAAAAGGATGGCAAACTATTCCAAAACCAAAAGGACATTCAGCTCTAGACTACGCACGGTGGGATAGTGTTGAAGATGATTCTAGTGATGATGATGGTGACAGTGAAGAAGAAGAATCTTTGCCTCAATACCGGTTTCGCGTAAGAACAATTGGTGTACGTCCTTTGGACCCTGAATTTTACATGGAACCCCTTCCTTTTGAAGCTGCTAAACGTCCTGTTGTGATAGCAAGTTTAAAGCCCAAAGGACCTCTAGTTTTGTTAAGAAGACCCCTTGGAAGTGGAAAAAGAGAACATATTGGGAGTGTAGATTACGATGCACACTTGGAGGAGAGATAA 1449 0.4355 MAHGSSADVSSLGGFPPWLRLWRPRLKLLEMQAALCKLIELVMISSRVEGRALCCWKGKMLGGHNTYGMARKALKGQDNFWRGWMLKNKRCLEGKRVQFKHRLVPLSICLSLHSRAVTEFTYKFQTLTDKFKLFLVLNIIIIIIIIIILEIAIGFGGRWRRRIESNALTRWFYTEAIAMAKTNPQKIALHSNRAACFLKLHDFKKAAEECTSVLELDHKHSGALMLRAQTLVTLKEYHSALFDVSRLLELNPSSEVYQNLQARLKTQLSLAPIPESEEEFEEQEDEEPEVIIEEENEREEMGDKYSSISNIMTEQKDELGKGIVITECAAHEADPKFSMKQGGNQNYESKKFIADAIAHKAPSRESNEEHSKGWQTIPKPKGHSALDYARWDSVEDDSSDDDGDSEEEESLPQYRFRVRTIGVRPLDPEFYMEPLPFEAAKRPVVIASLKPKGPLVLLRRPLGSGKREHIGSVDYDAHLEER 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01624 482 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 171 426 - -
Vimu4g01624 482 Pfam Tetratricopeptide repeat 199 264 - -
Vimu4g01624 482 MobiDBLite consensus disorder prediction 359 376 - -
Vimu4g01624 482 MobiDBLite consensus disorder prediction 359 413 - -
Vimu4g01624 482 MobiDBLite consensus disorder prediction 394 408 - -
Vimu4g01624 482 Gene3D Tetratricopeptide repeat domain 165 280 IPR011990 GO:0005515
Vimu4g01624 482 SMART tpr_5 187 220 IPR019734 GO:0005515
Vimu4g01624 482 SMART tpr_5 221 254 IPR019734 GO:0005515
Vimu4g01624 482 SUPERFAMILY TPR-like 172 268 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01624 186 268 Calmodulin-binding Proteins AT3G25230 42.169 6.71e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01624 - - vum:124846515 404.831