Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01623 ATGCAGAAACATCAATACAATTCCATGGAATCTAGAACTGAGGAATTCCATTCTGCACAGCAATTGGTCCCTCAAGACCATCGTGATGGCATGCATATCAATGCACGGCCTCCAGCATATAATGTGTCAGAAAATAAACCTGTACTTAACTATTCCATACAGACAGGTGAGGAATTTGCTCTCGAGTTTATGAGAGATAGGGTGAATCTCAGGAAGCCTCCATTTCCAAATGTTGTGGGTGATCCCAACTATTCAACAGGCTATATGGAATTGAAAGGCATTTTGGGACATTCAGGATCTGAGAGTGGATCTGATATATCTGTGCTCACAAAGACTGAGAAGGGTCCTAAAGAGTTTGACAGAAGGAACTCTTCTCAAAACCCGGACAGAAGTAATTATGGTTCAGCTCGATCAATTCCTAGAACTTCATCCAATCAAGAAAGTTACCGAGTCCTTCATGGTACTGCCCCTTCCAGTGCATCTGAAATTTCATCCATGAAGATGAAGGTTCTATGCAGCTTTGGGGGGAAAATATTGCCAAGGCCTAGTGATGGAAAACTTAGATATGTTGGGGGTGAAACGCGTATTATAAGTATAAGAAGGGACATACGTTTGCCGGAGCTTATGCAGAAAACATCATTAATTTATAGTGAACCTCATGTGATAAAGTATCAGCTCCCTGGAGAAGATCTTGATGCGTTAGTTTCAGTATCTTCTGATGAGGATCTGCGGAATATGATGGAAGAATGTCATGATTTACAAGGTGAACGAGGATCAACCAAGCTCAGGATGTTTCTGTTCTCTATAAATGATTTGGATGATACTCAGTTTGGCATAGGTAGCATTGACGGTGACTCTGAAATCCAGTATGTAGTTGCTGTTAATGGCATGAGCATGGGTTCAAGAAACAACTCAATTCTTCATGCCGCAGGTGGCTCTACCAATAACTTGCATGAATTGAGTGAACAAAATAATGAGAGGGAGACCAACAGAGTTTTGATGGACTCATTTGGTGTTAGTGGCTCATCTTTGACTGACAATGTTAAATCATCATTGACTATTCAATCTTCACAACAAATGCTTCCAATCTCCTCTAGTGCTTTTGAAACCCATCCATTGTTTTATGATGAACCGGTTATTCACCAAGGGGAAGCTAGTCAATATCCACTACAGCACGGTCTTGGTCCTTCTAACCACTCCGCTCGCAATCTTGGAGAGATTCCAGTTTCTGTGCCTATTCAAAGTTTTGTTAACCAAGGGATCATGAATGATGGACAAACATCCAGTGAGTTGCAGGTACAAGTTTCAGCTATGCCAGACATGTTGGTAAAAAGAAAGGGTGATAATTTCATTCATACAGGCAACGATCCAGGAAAAGTTTTCCCCTTGGAAACACCATATCCTATTGCTTCGCTGCCATTTGAAGGAAATTTGCATGCTAATTTACCAGAGGCACCAGTTACTGCTGCTCTATCAGAAGGGCTTCATCCTGCAGTGCCATCAAAGAACAAGGGTAAGCACCAGCAGTCTGAAGATGCCTATTCATTAATCGGTAGTATGAATCGCACACAGACTCCTAAGTCTGGTGAAGATGATTTCTATACTACACCCACTGATGCATTCAGCCGTGCTCAGGTTGATGCTGAGTCCAATGTGATTGATTTCGGTAGCCTTGAACCACCTCCACTTCCCAACAGAGTCTATTATTCAGAGAGAATTCCAAGGGAGCAGGAAGATTTGCTGAATCGATCTACTAAGTCAGATGATGCGTATGGTTCTCACTTACTCATGTCCGATTTGCTTTCTGACTTCAGCCAGAAGAATTCAGAAACAGAATCCAGTGACATATTGCACGGTGGGAATATGTCAAATCAGAACATTATGTCCAGATCGGCACCAAAGCCTTTGCAAGTAGATGGCAATACCATTGATGATGGATTTGCCCCACCGCCAACATACAAACAGTGGCCTGATGCAACAAATAAGTTGAATTCAAAGTTATCATTGCCTGTGAATTCTGAGTTGAAGCAAGTGTTAGTAGATAATAAGGTTACTGGAACTGAAGACCAGATCCTTCATTCTGAAAATGATGCCAATCGTTCCAAAGACAACCATAACATCCTCTTAGTTGATGGACCCAAAGGTACTGGACATCTGGCTTTTCATCAGGTTCTTCCAGTTGATCATAATCTGAATGTAGTATCTAAACCTCCAGACCTCAATTTGGTTGAAGTCTCTACCAGGGAATTGGATAACGGTAAGGTCCAAGCTGTGTCTTTTCCTTCAACTGGAAACACAGGCCAAGATGATTCTCAAAATTTCCCCCCAGAAGTTAAACCAAGACCTACTGCTCAGGGAGACATTCTTATTGATATTGAGGACAGGTTTCCCCGTGATATCCTTCATGATATGTTCTCCAAAGCAATACTTTCCGAAGATTCATCGAGTAATGGTCCGTTACCAGCAGATAGAGCAGGTTTGAGCTCACACATGGACAATCATGAGCCTAAACGTTGGTCATATTTTCAGAACTTGGCCCAAGAGGGGTTTGATAATGTTTCTCTAATTGATCAGGACTATCTTGATTTTTCGTCTGCAGTGAGTAAAGTTCCAGATGGGGATAGTAATTCTCAGCAGTCTGCTGCTCTACTGGCAGATGGTGCTTTGGCAGGACACAAGGAATCTCACCTAAATTTCGGTGGTGACGAAAATCAGAAAAATGTACCTGTAACAACTAAAACAGAATCAACTCTCCTTCAACAAAAATATGAGCATTCCCAGCTAAAGGGCAATGAAAATAAGAACATGGACGCCATAATGGAAAACATAAGACCACAGGAATCTGAATACCTTGAGGATGACCAGAATGAAGCAAGGAATGTGGATTTGGCAGGGACTTTTGACATCAGTACTGTGCAGCATGCATTCTCTACTGAGATGATGGCAATGCATATCCTATATAAATTTGTTTCTGTAATATTGACCAGAAGAACATCTGTACTAGATGATGGCTTCTTCATAAAGAATGATGATCTTGAAGAGCTGCGAGAGCTGGGTTCTGGTACCTTTGGGACTGTGTACCATGGAAAGTGGAGGGGATCGGATGTTGCTATTAAAAGAATAAAGAAAAGCTGCTTCGCTGGTCGATCTTCAGAACAAGAGAGACTGACAATAGAGTTCTGGCGTGAAGCTGACATACTTTCCAAGCTTCACCATCCAAATGTTGTGGCATTTTATGGTGTAGTCCAGGATGGACCAGGAGCAACATTAGCCACTGTCACTGAGTACATGGTGGATGGTTCTCTCAGGAATGTTTTGCTTCGTAAGGATAGGTTGATAATAGCCATGGATGCAGCTTTTGGAATGGAATATTTACACTCAAAAAATATTGTGCATTTTGACTTGAAATGTGACAATTTGCTTGTGAACTTGAAGGATCCTTTACGGCCAATATGCAAGGTTGGTGATTTTGGCCTATCAAAAATTAAGCGAAACACCCTTGTTTCTGGTGGTGTTCGTGGAACTCTACCTTGGATGGCACCAGAGCTGCTAAACGGTAGCAGCAACAAGGTCTCAGAAAAGGTTGATGTGTTCTCTTTCGGCATAGTCTTATGGGAGATTCTTACTGGTGAAGAGCCATATGCTAATATGCACTATGGTGCAATTATTGGAGGGATTGTGAATAACACATTGAGACCTACAATTCCCAGTTATTGTGATCTTGAATGGAAAACACTGATGGAGCAGTGTTGGGCACCCAATCCTGCAGTTAGGCCATCCTTCACAGAAATTGCTCGCCGTCTGCGTGTGATGTCTGCAGCTGCTATTCAGAACAAGGGACAGTTTTCTGGTCCTGCTCATTTTGTTGTTGATTGTTGTGAATATCAGAACTTGTAA 3897 0.4196 MQKHQYNSMESRTEEFHSAQQLVPQDHRDGMHINARPPAYNVSENKPVLNYSIQTGEEFALEFMRDRVNLRKPPFPNVVGDPNYSTGYMELKGILGHSGSESGSDISVLTKTEKGPKEFDRRNSSQNPDRSNYGSARSIPRTSSNQESYRVLHGTAPSSASEISSMKMKVLCSFGGKILPRPSDGKLRYVGGETRIISIRRDIRLPELMQKTSLIYSEPHVIKYQLPGEDLDALVSVSSDEDLRNMMEECHDLQGERGSTKLRMFLFSINDLDDTQFGIGSIDGDSEIQYVVAVNGMSMGSRNNSILHAAGGSTNNLHELSEQNNERETNRVLMDSFGVSGSSLTDNVKSSLTIQSSQQMLPISSSAFETHPLFYDEPVIHQGEASQYPLQHGLGPSNHSARNLGEIPVSVPIQSFVNQGIMNDGQTSSELQVQVSAMPDMLVKRKGDNFIHTGNDPGKVFPLETPYPIASLPFEGNLHANLPEAPVTAALSEGLHPAVPSKNKGKHQQSEDAYSLIGSMNRTQTPKSGEDDFYTTPTDAFSRAQVDAESNVIDFGSLEPPPLPNRVYYSERIPREQEDLLNRSTKSDDAYGSHLLMSDLLSDFSQKNSETESSDILHGGNMSNQNIMSRSAPKPLQVDGNTIDDGFAPPPTYKQWPDATNKLNSKLSLPVNSELKQVLVDNKVTGTEDQILHSENDANRSKDNHNILLVDGPKGTGHLAFHQVLPVDHNLNVVSKPPDLNLVEVSTRELDNGKVQAVSFPSTGNTGQDDSQNFPPEVKPRPTAQGDILIDIEDRFPRDILHDMFSKAILSEDSSSNGPLPADRAGLSSHMDNHEPKRWSYFQNLAQEGFDNVSLIDQDYLDFSSAVSKVPDGDSNSQQSAALLADGALAGHKESHLNFGGDENQKNVPVTTKTESTLLQQKYEHSQLKGNENKNMDAIMENIRPQESEYLEDDQNEARNVDLAGTFDISTVQHAFSTEMMAMHILYKFVSVILTRRTSVLDDGFFIKNDDLEELRELGSGTFGTVYHGKWRGSDVAIKRIKKSCFAGRSSEQERLTIEFWREADILSKLHHPNVVAFYGVVQDGPGATLATVTEYMVDGSLRNVLLRKDRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSYCDLEWKTLMEQCWAPNPAVRPSFTEIARRLRVMSAAAIQNKGQFSGPAHFVVDCCEYQNL 1298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01623 1298 Gene3D Phosphorylase Kinase; domain 1 1004 1100 - -
Vimu4g01623 1298 MobiDBLite consensus disorder prediction 1 20 - -
Vimu4g01623 1298 Gene3D - 186 269 - -
Vimu4g01623 1298 Gene3D Transferase(Phosphotransferase) domain 1 1103 1283 - -
Vimu4g01623 1298 SMART serkin_6 1012 1271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01623 1298 SUPERFAMILY Protein kinase-like (PK-like) 989 1267 IPR011009 -
Vimu4g01623 1298 Pfam Protein tyrosine and serine/threonine kinase 1013 1268 IPR001245 GO:0004672|GO:0006468
Vimu4g01623 1298 MobiDBLite consensus disorder prediction 126 158 - -
Vimu4g01623 1298 CDD PB1_UP2 171 267 - -
Vimu4g01623 1298 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1005 1099 - -
Vimu4g01623 1298 MobiDBLite consensus disorder prediction 812 831 - -
Vimu4g01623 1298 ProSiteProfiles Protein kinase domain profile. 1012 1270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01623 1298 SMART PB1_new 182 269 IPR000270 GO:0005515
Vimu4g01623 1298 MobiDBLite consensus disorder prediction 111 125 - -
Vimu4g01623 1298 Pfam PB1 domain 184 267 IPR000270 GO:0005515
Vimu4g01623 1298 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1130 1142 IPR008271 GO:0004672|GO:0006468
Vimu4g01623 1298 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 187 269 - -
Vimu4g01623 1298 PANTHER SERINE-THREONINE PROTEIN KINASE 212 1269 - -
Vimu4g01623 1298 CDD STKc_MAP3K-like 1018 1268 - -
Vimu4g01623 1298 MobiDBLite consensus disorder prediction 759 783 - -
Vimu4g01623 1298 MobiDBLite consensus disorder prediction 759 773 - -
Vimu4g01623 1298 SUPERFAMILY CAD & PB1 domains 183 275 - -
Vimu4g01623 1298 MobiDBLite consensus disorder prediction 95 158 - -
Vimu4g01623 1298 ProSitePatterns Protein kinases ATP-binding region signature. 1018 1043 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01623 Vimu-Chr4 17412611 17420599 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01623 34 618 MAP Kinase Kinase Kinase AT1G16270 38.522 4.88e-96 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vimu4g01623 PK_Tyr_Ser-Thr 8.1e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01623 - - var:108333936 2406.71