Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01622 TTGCTTGAGTGCTATAGTGGGTGTCTATGCGACAATGTGGCCTTTAGCAGCACTAGAGTTGATGTGTTCTCCTTTGGCATAGTATTATGGGAGATTCTAACCGGTGAGGAGCCATATGCCAATATGCACTATGGTGCAATCATAGGTGGGATTGTGAATAACACATTAAGACCAACAATACCAAATCATTGTGATTCTGAATGGAGAACACTGATGGAGCAGTGTTGGGCGCCCAATCCTGCAGCTAGGCCCTCCTTCACAGAAATAGCTCGTCGATTGCGCATAATGTCCGCAGCTGCTAAATCATCGGGCCAAAAAGCATCTAGATGA 330 0.4576 MLECYSGCLCDNVAFSSTRVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPNHCDSEWRTLMEQCWAPNPAARPSFTEIARRLRIMSAAAKSSGQKASR 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01622 109 Pfam Protein tyrosine and serine/threonine kinase 17 93 IPR001245 GO:0004672|GO:0006468
Vimu4g01622 109 PANTHER SERINE-THREONINE PROTEIN KINASE 19 94 - -
Vimu4g01622 109 ProSiteProfiles Protein kinase domain profile. 1 95 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01622 109 SUPERFAMILY Protein kinase-like (PK-like) 17 93 IPR011009 -
Vimu4g01622 109 Gene3D Transferase(Phosphotransferase) domain 1 3 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01622 Vimu-Chr4 17407771 17408954 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01622 17 106 MAP Kinase Kinase Kinase AT1G16270 83.333 2.20e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vimu4g01622 PK_Tyr_Ser-Thr 4.3e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01622 - - gmx:100799639 164.851