Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01621 TATAAAGAGGAAAAAAATGGCGTGACTGAACAATCAAGATTTGATAACACGTACAGTAACATGGAATCTAGACTTGATGAATGGCACCAATCTCGATCACAGCCAGTGATGCAGGACCATTTGGATGGCACGCTTACCCATAGAAGACAAGTTGACTTTAATACATCAGAAGTTAAACCTGTACTTAATTACTCTATACAGACAGGTGAAGAATTTGCTCTTGAGTTTATGAGAGATAAGGTGAATATGAGTAAGCCTGTATTATCAAATGTTAGTGATTCGAATTATACCCCAGGTTATATGGAACTGAAAGGCATTTTAGGTATCAACCATGCAGGATCTGAAAGTGGATCTGATATCTCTATGTTCTCAATGGCTGAGAAATATCCAAAAGAATTTGATACAACGAGTACATCTTTGCCTGGAGACAGAATCAACTATGGGTCTATTCAATCAATGCCAAGAACTTCATTGAATCAGGATAATAGGCAATTTGTGCCTGGGTATGGCTCTTTTGGAGCTTATGATAGATCAATGATCATGAAGTTTCTTTGCAGCTTTGGTGGTAAAATATTGCCACGACCATGCGATGGAAATCTAAGGTATGTTGGAGGCCAAACACGTATTCTTCGACTAAGAAAGGACATATCTTGGCTGGAGCTCATGCAGACAGCATTTCAAATCTATAGTCAGGTTTATGCAATCAAGTATCAGCTTCCTGGGGAAGATCTTGATGCTTTGGTATCTGTATCATCTGATGAGGATTTGCAGAATATGATGGAGGAATGTAATCATCTACAAGATAGGGAAGGATCACAAAAACCTAGGATGTTTTTGTTCTCAATGAGTGACTTGGAGGATGCTCAATTTGGTCTCAGCAGTATGGGTGATGATTCTGAGATTCAATATGTTGTTGCTGTTAATGGCATGGACTTGGGATCAAGAAAAAACACTACAATGATTGGTGTCAGCGTTTCGGCAAATGACATAAATGAATTGGACAGACAAAGTATTGACAGGGAGACTAATAATAGAGTTGGTATAGAATGTATTGTACAAGGAAATCCTCCCCCAACTAACAATTTAGACTCATCATTGACTCCTCAATTTTCACCATCAGTGCTACCAACTTCCTCAAATTCATATGAAAAGTATCCACTGTTTTATAGTGATCAAATGATGTGCCATGGGCAACTTAGTGATCAATACTTTATTAATGAAGGCATTGATCTTTCTCATAAACCTGTTATTGGAGAGACCCCGATGATTATGCCTCCCCATATGCTTGTCAATCAACAAGGGATTTTGAATGAAGGCCTTCCTCCTCGAGGAATACAAGTACAAAATTCAGAAATACCAACAACATTGGCAAACAAGATGGTTACTAGTTCAATTCCACAAGTAAGTGACCCTGGGAAAGTTTTGGCCTCAGAATTACCATCACCCGCTCCTGCTCAACTGCTTAATGGTTACATGAAAAATAATTTTCCTGAAGCATCTGTTGTAGTTACTGTGTCAGAGGGGTTTTCATTGCATCCACCAAGCGTGAACAAGGGCCAAGATTATGAAGAGACTTCTTCTACAAGCAGTGCATTTGGCCCTACTTATGTTGATTCCCACTCCAATGCTTCTGACTTGAGTTCCCTTCATCCTCCTCCTCTTCCTAAGAGAGTTTACTATTCAGAGAGAATTCCACGCGAACAGGTAGAGTTGCTGAACCGGTCCTCAAAATCTGATGATACACACAGCTCTCAGTTTCATGTTCCAGATTTACTCTCTGATATCAACGCACCCGATTTAGTTACAGAATCTGTTGACAAGTTGCATGATGGAAATCTGTCTGATCTAAATGAGGAATTAAGCATCACAGAAAATCTGTTGCATGCAAATGTATTTTCAGTTGATAATGGGATTGTCAATAATCAAATCTACAAACAGCCGCCTGATGCAAACACTCTGATAAAATCAAAGCTAACTGAGCATGTGAATCCTGAGCTGAGGCAGGTATTATCGGACAATGAAGGACACACAGATGTGCTAAACAAAGATAATGTTGTTGGGTTGGAAATGAAAATTAATGGTAACAATAGCTATAACAAACCCCTGATTGATGAGACAAAAGCCAGTAAACCTGACTTGCAGAATTTGCACCATGTTTCTTCTCGTAATAATCTTGATGATCCTGCATCCACTCTTCCAGAGGTTGACTGGGGTGATACCTCTGTGAAAGAGTCTAATGACAATGTTAATGTGCAGGCCTTACCTGTATCTCTAAATGGGAATATTGATGATGATTCTGAAGAATTTCCTTCTGATGTTATCATGAAACAAGCACATGGTGACATCCTTATTGATATTAATGATCGGTTTCCCCGTGAATTTTTCACTGATATATTCTCTAAAGCAGTACTTGAAGAAGACCCCTCTAGTTTCCATCAATTAACTTCAAATGGAGTGGGCTTAAGTGTAAACATGGAAAATTGTGATCCTAAACGATGGTCGTATTTTCAAAAATTGGCTCAAGCAGGCATTGATAATGTGTCTCTTATTGACCAAGATCATCTTGGGTTTGCACCTGCGATAGGAAAAGTGGTTGGAGATGATAGAGCTCAACATGTTACACCTTTAACAACTGATGAAGTTTCTCTGAACCATGCAGAGTCCCACCTCCATTTTGTTGAAGAAAATTTGCTTGGAAGAATTGGAGGAGAAAGAAAGTCTAACTATGATCATTCCCAAGTGAATGACACTGAAAGCATGCAATTTGATGCTATGATGGAAAACATAAGAGCTCAAGAGTCAGAATGCGAGGTTGGGATGTTTGAAAAAAGGAATAACAATCTACATCCTCCTGATCCTTCTTTGGGAGAGATTGATACGAGTTCTTTGCAGGTCATAATGAATGATGATCTTGAAGAGCTGAAGGAACTGGGTTCTGGTACCTTTGGCACCGTGTATCATGGAAAATGGCGAGGAACAGATGTTGCCATCAAAAGAATAAAGAAAATCTGCTTCACTGGTCGATCATCTGAGCAAGAGAGACTGACTGTAGAATTCTGGCGGGAAGCCGATATTCTTTCCAAGCTTCATCATCCAAATGTGGTGGCATTTTATGGTGTAGTGGAGGATGGACCCGGAGGAACAATGGCTACTGTTACAGAGTACATGGTGGATGGTTCTCTTAGGCATGTGTTACTTCGCAAGGATAGGTATCTTGATTTTCGTAAGAGACTGATAATTGCGATGGACGCAGCTTTTGGAATGGAATATTTACACTCAAAAAATATTGTACACTTTGACCTAAAATGTGACAATTTGTTGGTGAACTTGAAAGATCCGATGCGGCCTATTTGCAAGGTTGGGGATTTTGGATTATCAAAAATTAAAAGAAATACCTTGGTTTCTGGTGGTGTGAGGGGGACTCTTCCTTGGATGGCACCAGAGCTTCTGAATGGTAGCAGCAACAAGGTCTCAGAAAAGGTGGAATTTTTATCTGTTTGA 3501 0.3956 YKEEKNGVTEQSRFDNTYSNMESRLDEWHQSRSQPVMQDHLDGTLTHRRQVDFNTSEVKPVLNYSIQTGEEFALEFMRDKVNMSKPVLSNVSDSNYTPGYMELKGILGINHAGSESGSDISMFSMAEKYPKEFDTTSTSLPGDRINYGSIQSMPRTSLNQDNRQFVPGYGSFGAYDRSMIMKFLCSFGGKILPRPCDGNLRYVGGQTRILRLRKDISWLELMQTAFQIYSQVYAIKYQLPGEDLDALVSVSSDEDLQNMMEECNHLQDREGSQKPRMFLFSMSDLEDAQFGLSSMGDDSEIQYVVAVNGMDLGSRKNTTMIGVSVSANDINELDRQSIDRETNNRVGIECIVQGNPPPTNNLDSSLTPQFSPSVLPTSSNSYEKYPLFYSDQMMCHGQLSDQYFINEGIDLSHKPVIGETPMIMPPHMLVNQQGILNEGLPPRGIQVQNSEIPTTLANKMVTSSIPQVSDPGKVLASELPSPAPAQLLNGYMKNNFPEASVVVTVSEGFSLHPPSVNKGQDYEETSSTSSAFGPTYVDSHSNASDLSSLHPPPLPKRVYYSERIPREQVELLNRSSKSDDTHSSQFHVPDLLSDINAPDLVTESVDKLHDGNLSDLNEELSITENLLHANVFSVDNGIVNNQIYKQPPDANTLIKSKLTEHVNPELRQVLSDNEGHTDVLNKDNVVGLEMKINGNNSYNKPLIDETKASKPDLQNLHHVSSRNNLDDPASTLPEVDWGDTSVKESNDNVNVQALPVSLNGNIDDDSEEFPSDVIMKQAHGDILIDINDRFPREFFTDIFSKAVLEEDPSSFHQLTSNGVGLSVNMENCDPKRWSYFQKLAQAGIDNVSLIDQDHLGFAPAIGKVVGDDRAQHVTPLTTDEVSLNHAESHLHFVEENLLGRIGGERKSNYDHSQVNDTESMQFDAMMENIRAQESECEVGMFEKRNNNLHPPDPSLGEIDTSSLQVIMNDDLEELKELGSGTFGTVYHGKWRGTDVAIKRIKKICFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVEDGPGGTMATVTEYMVDGSLRHVLLRKDRYLDFRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPMRPICKVGDFGLSKIKRNTLVSGGVRGTLPWMAPELLNGSSNKVSEKVEFLSV 1166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01621 1166 SMART PB1_new 195 282 IPR000270 GO:0005515
Vimu4g01621 1166 Pfam PB1 domain 197 280 IPR000270 GO:0005515
Vimu4g01621 1166 Gene3D Transferase(Phosphotransferase) domain 1 955 1165 - -
Vimu4g01621 1166 CDD PB1_UP2 184 280 - -
Vimu4g01621 1166 ProSiteProfiles Protein kinase domain profile. 971 1166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01621 1166 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1096 1108 IPR008271 GO:0004672|GO:0006468
Vimu4g01621 1166 ProSitePatterns Protein kinases ATP-binding region signature. 977 1002 IPR017441 GO:0005524
Vimu4g01621 1166 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 200 282 - -
Vimu4g01621 1166 PANTHER SERINE-THREONINE PROTEIN KINASE 225 1157 - -
Vimu4g01621 1166 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 964 1058 - -
Vimu4g01621 1166 Gene3D - 201 281 - -
Vimu4g01621 1166 SUPERFAMILY CAD & PB1 domains 197 284 - -
Vimu4g01621 1166 Pfam Protein tyrosine and serine/threonine kinase 972 1154 IPR001245 GO:0004672|GO:0006468
Vimu4g01621 1166 SUPERFAMILY Protein kinase-like (PK-like) 953 1160 IPR011009 -
Vimu4g01621 1166 SMART serkin_6 971 1164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g01621 1166 MobiDBLite consensus disorder prediction 512 554 - -
Vimu4g01621 1166 MobiDBLite consensus disorder prediction 519 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01621 Vimu-Chr4 17402209 17407623 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01621 54 586 MAP Kinase Kinase Kinase AT1G16270 38.715 6.10e-85 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vimu4g01621 PK_Tyr_Ser-Thr 3e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01621 - - gmx:100799639 1863.2