Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01615 ATGGCCTCAATCCCACACTTGTATCAAAACTACACCTTCACTACTCACGATCTTTCAGAGTTTCCTAACCCACACATCACTGCCAACGCCTCACTCATCGATAATACCATGTGGGCTGCTCAAGATACCTTGATTCCTGTGCTTGATATCAACAATGGTGCACTTGATCATATTGTGTCACTCGATTCTGATACCATGGCTTGTGCCAATTGGATGCCTTCCTTCTCTGACCAAGTTGGGGGGCTCTCGGATTTGGCCATTTCAGACTGCAAAATGGGCTTCTATGGCGGCTTTCAGAACTTCAACGCCAGATACCAGCCACATATTGGGGACTTTGGAGAAGAATGTTGTGCGTTTCTGGAGGATGTTAAGCCACCTCCATATCCTAATGCTGCAAGAGAAAACTGGGGACTTCAAGGTAATCAAATACAAGCAGTTGAAGAGCCAAATATAAAGGTAGGAAGGTACTCAGAAGAAGAGAGGAAAGAAAGAATTCTGCGATATTTGAAGAAAAGAAATCAAAGAAACTTTAACAAAACCATCAAGTACGCATGTCGGAAAACCTTAGCTGATAGGCGAGTCAGAGTTAGGGGAAGGTTTGCAAGAAACAATGAGCTTTGTGATGAAGACATGACATCAAAAAAACACGAGAATCATCATCACCACAAAGAAGACTTCTACGGTGCTGATTCAATCCAGTTCCAGTTAAAGAATGATGAGGAAGATTGGCTGCAAGAGGCTATGGCAAGTCTAGTTTATTTATCTCACTCTTCACCAGAGGATATGTAA 789 0.4271 MASIPHLYQNYTFTTHDLSEFPNPHITANASLIDNTMWAAQDTLIPVLDINNGALDHIVSLDSDTMACANWMPSFSDQVGGLSDLAISDCKMGFYGGFQNFNARYQPHIGDFGEECCAFLEDVKPPPYPNAARENWGLQGNQIQAVEEPNIKVGRYSEEERKERILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNELCDEDMTSKKHENHHHHKEDFYGADSIQFQLKNDEEDWLQEAMASLVYLSHSSPEDM 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01615 262 ProSiteProfiles CCT domain profile. 161 203 IPR010402 GO:0005515
Vimu4g01615 262 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 129 218 IPR045281 GO:0009909
Vimu4g01615 262 Pfam CCT motif 161 203 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01615 Vimu-Chr4 17332273 17333710 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01615 157 211 C2C2-CO-like Transcription Factor Family AT5G57660 47.273 1.84e-10 58.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu4g01615 CCT 7.9e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01615 - - vra:106761508 526.554